| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4272 |
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| Symbol | |
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| ID | 5611912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5243279 |
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| End bp | 5244652 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935232 |
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| Product | argininosuccinate lyase |
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| Protein accession | YP_001476004 |
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| Protein GI | 157377404 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0165] Argininosuccinate lyase |
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| TIGRFAM ID | [TIGR00838] argininosuccinate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.507417 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTAT GGGGTGGAAG ATTTAGCCAG GAGAGTAGCG CGCTATTTAA ATTATTCAAT
GACTCATTGC CTGTCGATTA CCGCTTGGTC GAGCAAGATA TTGTCGGCTC GATAGCTTGG
GCCGGTGCTA TCACCCAGGT GGGGATTTTG TCTGAAGCTG AGTGTCAGCA ACTACAACAG
GCATTAAAAG AGCTATTGGG TGAAGTGGAA GAGAAGCCTG AGCTTATTCT GGCGTCGGGT
GCCGAAGACA TTCACAGTTT TGTCGAACTA TCTTTGATTG CTAAAGTCGG GGATCTTGGA
AAAAAACTTC ATACTGGGCG TTCACGCAAT GATCAAGTAG CAACCGATCT TAAGCTTTGG
TGTAAGAAAG AGGGTCAGCA GCAACTGTTG TTGCTTAAAG CGTTAAGGCA AGCGCTATTA
GAGCTGGCAG AAAGAGAACT TGACGCTGTT ATGCCAGGTT ACACACATCT TCAGCGTGCA
CAACCAGTGG CTTTCGGGCA TTGGTGCTTA GCCTATGTTG AGATGTTTGA GCGTGATATT
AGTCGTTTAG AAGATGCGCT CAAACGTGCC GATACTTGTC CTCTGGGAAC GGGGGCACTT
GCAGGTACTG CATATCCTAT GGATAGGTAT AAGCTGGCGG AATCCTTGGG TTTCGCGTCG
CCGACACTCA ATAGTTTAGA TACTGTGTCG GACAGGGACC ATGTAGTTGA GATCTGCAGT
GATGCTTCAA TTAGCATGAT GCACCTAAGC CGTATGGCGG AAGATCTTAT CTTCTTTAAC
AGCGGTGAAG CCGGTTTCAT CGACCTCGAT GATGAAGTTA CATCCGGATC TTCACTAATG
CCACAGAAGA AGAATCCTGA TGCACTCGAG TTAATCCGTG GTAAAACGGG CCGGGTTTAT
GGCAGCCTTA TCGGTATATT AACGACCATG AAGGCACTGC CGTTAGCCTA CAACAAAGAT
ATGCAGGAAG ACAAAGAGGG CTTATTTGAT GTGATGGATA GCTGGGCTAT CTGTCTCGAA
ATGGCTGCTT TAGTGCTAAG TGGTTTAAAG GTTAATCGTG AAAACACCTT AAGTGCTGCG
CAGCAGGGCT ATGCAAATTC TACCGAACTT GCAGACTACC TTGTAGCTAA AGGTATGCCA
TTTAGAGAGG CACATCATGT CGTCGGTGAA GTCGTGGTTA AAGCGATAGC GCAGAAGAAA
CCCTTAGAGG ATTTTGAGCT GAAAGACCTG CAATCATTTT CAGAAATTAT CACAAGTGAT
GTGTATGATT GTCTGACAAT TGAATCATGT CTTGAGAAAC GAGAAGCGCT AGGCGGAACA
GCTTTACCCC AGGTCAGAGC CGCATTGGCA ACAAAATTAG CCGCTTCTGA GTAG
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| Protein sequence | MALWGGRFSQ ESSALFKLFN DSLPVDYRLV EQDIVGSIAW AGAITQVGIL SEAECQQLQQ
ALKELLGEVE EKPELILASG AEDIHSFVEL SLIAKVGDLG KKLHTGRSRN DQVATDLKLW
CKKEGQQQLL LLKALRQALL ELAERELDAV MPGYTHLQRA QPVAFGHWCL AYVEMFERDI
SRLEDALKRA DTCPLGTGAL AGTAYPMDRY KLAESLGFAS PTLNSLDTVS DRDHVVEICS
DASISMMHLS RMAEDLIFFN SGEAGFIDLD DEVTSGSSLM PQKKNPDALE LIRGKTGRVY
GSLIGILTTM KALPLAYNKD MQEDKEGLFD VMDSWAICLE MAALVLSGLK VNRENTLSAA
QQGYANSTEL ADYLVAKGMP FREAHHVVGE VVVKAIAQKK PLEDFELKDL QSFSEIITSD
VYDCLTIESC LEKREALGGT ALPQVRAALA TKLAASE
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