Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4271 |
Symbol | |
ID | 5611911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5240608 |
End bp | 5243139 |
Gene Length | 2532 bp |
Protein Length | 843 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640935231 |
Product | peptidoglycan glycosyltransferase |
Protein accession | YP_001476003 |
Protein GI | 157377403 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.600271 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGTGGT TAAAACGTAT TATTATTGCT CTATTCAGCC TAGCTCTTTT GGGCGTTGGC GCCATTGCTG CGGCCTATTT TTATGTGTTG CCCGAACTCC CGGACGTAAA CACGTTAAAA ACGGTAAAAC TTCAAACCCC ATTACGCATA TACAGTAGTG ACGGCAAGCT GATCTCTCAA TTTGGTGAAA AGAGACGAAT TCCGGTTGAT TTTCAAAATG TTCCCCCACT TCTTATCGAT GCTGTTTTAG ATACGGAAGA TGCCAGGTTT TTCGAACATC ATGGTATCGA TCCTATCGGT ATCACTCGTG CGGCATTCAT TCTTTTAACC ACAGGAAAAA AGAGCCAGGG GGCTAGCACC ATCACCCAGC AGGTAGCACG AGGCTTCTTC CTTTCCCGTG AAAAGACCTA CATACGTAAA ATTAAAGAAA TTTTTCTAGC CATAAAAATT GAGAAGGCCT TATCTAAAGA GAAAATTTTA GAGCTGTATC TAAATCGCTC TTTCTTAGGT AATCGCGCCT ATGGTGTCGG CGCCGCTGCA CAGGTCTATT ATGGCAAAGA ATTAAATCAG CTAACCCTAC CAGAGATGGC AATGATCGCC GGTCTACCTC AGGCACCTTC AGCAGCCAAT CCTATTCGTA ATCCTGCAAG AGCGATGAAT CGTCGTAATT GGGTATTGAG CCGTATGTTA GAGAAGCAAA ACATTACTCA GGCTCAGTAT ATGGAGGCAA CCCAATCTCC CATCACGGCG AAATATCACG GGGCTGAAAT TAATCTCTAT GCTCCCTATA TTTCAGAGAT GGCGAGAGAC TATTTAGTTG AAAAATATGG TGAAGAGGAG GCTTACACTG GTGGCTATAA CATCTATACC AGCATTGATT CCACGCTTCA GCTAGAGGCT CAGCAGGCAC TGAGAAACAA TGTCTACGCC TATGATGAGC GACATGGCTA CCGCGGCCCG AAAGCCGTTC TTTGGACCGA TAGTCCACTG AACAATCAAG ATATTATCGA CCGTCTAAAA CAGACCAAAG CATTTCAAGG CCTATTACCC ACTGCTATCA TAAGTATGAG CGAGCAAAGT GTTCGAGTGC TCACCGCCAA AGGTGAAACG TTAGAGATTG ACTGGCAAGG GCTAAAGTGG GCCCGTAAGT TCATCTCTAA TAAACGTCAG GGAAAAGCCC CTAAAATGGC CTCTGAAGTT GTCGCTGTCG GTGAACAGGT ATGGATTCGC AATAATGGGG AATTTTGGCA GTTAGCTCAA ATTCCTGAAG TAGCCAGTGC AATTGTCTCC CTCGACCCCC ATGACGGCGC CATACGTACT CTGGTCGGTG GCTTTAGTTT CCATACCAGC CAATACAACC GTGTAACTCA GGCTAAGCGT CAACTAGGTT CAAATATTAA ACCCTTTATC TATACAGCGG CGATGGAGAA AGGCTATACC CTGTCGACCT TAATCAACAA TGCACCGATT AATAATGCCG ATACCAGACA AGGTACTGCA TGGCGCCCTA AGAACTCACC AGATCGGTAT ACAGGGCCAA CCAGGTTACG TGTCGGACTT GCGCAATCGG TCAACGTCAT GTCTGTCAGG ACTATGCGTT ATGCCGGTCT CGATATGGCT ATCAATACTT TAGTCAAATT TGGTTTCAAT GCCGAAGATA TCCCAAGAAA TGAGTCCATC GCATTAGGCT CAAACTCGGT AACCCCACTT CAAGTCGTTA CCGCATTTTC TACCTTTGCC AATGGCGGAT ATAGAGTTGA ACCCTATTTT GTTGAACGAA TTGAAGATTC TTACGGGCAG ATCATCGAAC AATCGAATCC AACCCTTGCC TGCAAGCCCG AACCAGACCA GTTAGAAGCA GCCACTGAGG ATCCTTTTGC CTCTATGGCT GATGAGCTAC AGCAGCCAAC AACTCAAGTA ACAGAGCCAA GTTGTGGTGA TAAAGACAGT CGATATGCGC CCCAAATCAT CTCTGAACAA ACCGCATTCC TGATAACCGA TGCATTAAAG AGTGTTATCT GGGGCGGCGG CAACTGGAGC AAAGGGACTG GCTGGAATGG TACGGCCTGG CGAGCGGCAA GAGTCGTAAA AAGACATGAT ATTGCCGGAA AGACAGGAAC AACCAACGAA TCCCGGGATA CCTGGTTTAG TGGATTTAAC CCCAAACTCG CCACAACGGT GTGGGTAGGC TTTGACGATC ACAGTAAGGA GTTGGGCAGA ACCAGTTGGA ATGCTAATGC CGCAAAAGAT CAAATTTCTG CAGCAGAGGC AGGGGCAAAG ACTGCAGGAC CGGGATGGAA TGAGTTCATG AAAAATGCCC TATCCGGTAC GCCTGAAGCT CCGACGACTC CGCCAGAAGG TATCATCTCT GTAAGAATAG ATCTGGCAAC CGGAAAGTTA AGCCGCAAAA CCGATTACAC CAGTAGATTT GAGTATTTTG TATCAGGCAC AGAACCAAAA GAATTCGCAA CAGAAGCTGA AGAGGTAAAC GACATCTTCA TCGAAGACTC CACTGAGGAG CTGTTCCAGT AA
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Protein sequence | MKWLKRIIIA LFSLALLGVG AIAAAYFYVL PELPDVNTLK TVKLQTPLRI YSSDGKLISQ FGEKRRIPVD FQNVPPLLID AVLDTEDARF FEHHGIDPIG ITRAAFILLT TGKKSQGAST ITQQVARGFF LSREKTYIRK IKEIFLAIKI EKALSKEKIL ELYLNRSFLG NRAYGVGAAA QVYYGKELNQ LTLPEMAMIA GLPQAPSAAN PIRNPARAMN RRNWVLSRML EKQNITQAQY MEATQSPITA KYHGAEINLY APYISEMARD YLVEKYGEEE AYTGGYNIYT SIDSTLQLEA QQALRNNVYA YDERHGYRGP KAVLWTDSPL NNQDIIDRLK QTKAFQGLLP TAIISMSEQS VRVLTAKGET LEIDWQGLKW ARKFISNKRQ GKAPKMASEV VAVGEQVWIR NNGEFWQLAQ IPEVASAIVS LDPHDGAIRT LVGGFSFHTS QYNRVTQAKR QLGSNIKPFI YTAAMEKGYT LSTLINNAPI NNADTRQGTA WRPKNSPDRY TGPTRLRVGL AQSVNVMSVR TMRYAGLDMA INTLVKFGFN AEDIPRNESI ALGSNSVTPL QVVTAFSTFA NGGYRVEPYF VERIEDSYGQ IIEQSNPTLA CKPEPDQLEA ATEDPFASMA DELQQPTTQV TEPSCGDKDS RYAPQIISEQ TAFLITDALK SVIWGGGNWS KGTGWNGTAW RAARVVKRHD IAGKTGTTNE SRDTWFSGFN PKLATTVWVG FDDHSKELGR TSWNANAAKD QISAAEAGAK TAGPGWNEFM KNALSGTPEA PTTPPEGIIS VRIDLATGKL SRKTDYTSRF EYFVSGTEPK EFATEAEEVN DIFIEDSTEE LFQ
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