| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4267 |
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| Symbol | |
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| ID | 5611405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5237640 |
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| End bp | 5238155 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640935227 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001475999 |
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| Protein GI | 157377399 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3168] Tfp pilus assembly protein PilP |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.220429 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTC TTCCTTTATT AGTATTTAGC CTTTTTTTGG TGGGCTGTGT TGGCGATCGA
AGTGATTTAG AGCTATTTGT TACTACGACA AAGGCGCAGC ATGTGGCACA TATTCCGCCA
TTGAAAGAAC CGCCTAAATT TGAACATTTT GAGTATCAAG CCGATTTAAT GCGCAGCCCC
TTCGTTCCTC CTTCACGAGA ATTAACGGAA GAGGTCATAG ATACCACAAA GGACTGTTTA
CAACCCGACC TTAAGAGACG TAAAGGGCGC TTAGAAACTT ATGCTCTGGA TAACTTAAAG
ATGCGTGGGA CATTGAGTGA AGTTGGGAAC ATCTGGGCCC TGGTAGAAAC AAATGATGCT
AGTGTTTATC GTTTAGGTAT TGGAGAATAC TTGGGTCTAT ATCACGGAAG AATTGCTAAA
GTTACACCAC AAACAGTCGA AATAATTGAA TTAATTCCAG ATGGTTCTGG TTGCTGGACG
GAAAGACTCA GCAACTTAGA ATTAACTGGG AAATAA
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| Protein sequence | MKLLPLLVFS LFLVGCVGDR SDLELFVTTT KAQHVAHIPP LKEPPKFEHF EYQADLMRSP
FVPPSRELTE EVIDTTKDCL QPDLKRRKGR LETYALDNLK MRGTLSEVGN IWALVETNDA
SVYRLGIGEY LGLYHGRIAK VTPQTVEIIE LIPDGSGCWT ERLSNLELTG K
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