| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4266 |
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| Symbol | |
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| ID | 5611404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5235570 |
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| End bp | 5237618 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640935226 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001475998 |
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| Protein GI | 157377398 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.225948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.314377 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAATCTT CTGCCGCGAA TAAAAACTTT TTTAATGTGT CAGCGCTTTT TAGGCTTGTT
GTTAGTTTAG CGCTAATTTC TGCAGGAACA TCGTATGCGA TGGCTGCGAA TCGTCTAGTG
GATGTAAAGT ACCACTCTAT CGTTGATCAT CAGTTAGAGC TTCAATTGAT TTTTGAAAAT
GAAATCATGG AGCCGGAAAT TGAGTTAAAT GCATCCCCTG CTGAAATTAT CCTTGGCTTT
AATGAAAGTG TATCTGGCTT AGAAAAAGAG TCTCTTCCAA TAAATACAGT TGGAGTCGAG
ACTATTGAGG TTAAACAAGA TAATAGTGTT ATGAAGGTGG TCGTCGCACT GGATAAGGTC
AAAGCTTACC AAGGTAAACT TGCCGGTAAT GTTTATAGTC TTACGATTAA CGATGAGGTG
GCGAATAGCG CTACAAAGGA AACGAATCCA TTTATCAATG GCGTTGATAA TATTGATTTT
AGAAGAACCT CCGACGGAGG AGGAGAGCTA CTGGTTAAGC TGAATAATAG CTCTGTCGCG
GCGAATGTGG AGCAGGTGGG GGCTAAGCTT GAATTGAAGC TATATAACAC TGAAATAGCT
TCAGAGCTGC TCTATGTCAT GGATGTTCAG GACTTTGCCA CGCCGGTGAG AAGCTTTGAA
ACCTTTAAGG ATGAGTTGAC CACACGTGTA CTTATAGATA TCGCCGGAAA TTATGAGTAC
AACTATAAAC AGGAGGGCAG CCTGTTTAGG TTGAGTGTGA CTAAGGTTGA ACGAGTTAAT
GTCGTCAAAA AAGAGAAAAA GTACGACGGA CGCTCATTAT CCCTGAACTT TCAAAGTATC
TCTGTTAGAA CCGTTCTTCA GATTATTGCC GATTATAACG ATTTCAACTT AGTGACCAGT
GATACGGTCG AAGGCGATAT CACTCTACGT TTAGATGATG TTCCCTGGGA TCAGGCTCTG
GATCTTATCT TACAGACGAA GGGGCTGGAT AAGCGCATCG AGGGGAATAT CCTGATGATC
GCTCCTAGTG AAGAGTTAGC CATTCGCGAG AGTCAGCAAT TAAAGAATAT GCAGGAAGTT
AAAGAGCTTG CACCGCTATA TTCTGAATAC CTGCAGATAA ATTATGCTAA GGCGACTGAC
ATCGCCGAAC TGTTAAAAAG TGAAGGCTCC AGTCTGTTAT CGAGCCGTGG TAGCGTTGCG
GTCGATGAAC GTACCAATAC ACTTTTGGTG AAAGATACTG AAGATATATT AGAGAATGTT
CATCGATTAA TTGAGGTTCT GGATATTCCA ATTCGTCAGG TGCTCATCGA GTCTCGCATG
GTGACAGTAA AGGATGATGT CTCCGAGGAA CTTGGTATTA GATGGGGAGT GACAGATCAG
CAGGGTGATA AAGGCACTTC CGGAAGTCTT GAGGGAGCGG AGAGTATTTC AAATGGCATC
GTACCAGCCC TTGTTGATCG CTTGAACGTG AATTTGCCGG CATCTACCGG TGCTGCGAGA
GTTGCTTTTC ATGTGGCTAA GCTGGCCGAT GGAACGGTAC TCGATATGGA ATTGAGTGCG
TTGGAGAAGG AAGATAAGGG AGAGATTATC GCCAGTCCAC GTATCATGAC CTCTAATCAA
AAAGCTGCCT ATATCGAACA GGGTGTAGAG ATCCCCTATT TAGAGGCGAG CTCTAGTGGT
GCCGCAACGA TTAGCTTTAA AAAGGCGGTG TTGTCATTGC GTGTCACACC ACAAATTACA
CCAGATAATA GGGTGATCCT CGATCTTGAA ATTACTCAGG ATTCTCAAGG TAAAGTCGTT
GCAACACCTT TGGGGTCGGC AGTTTCTATC GATACTCAAC GAATAGGAAC TCAGGTTTTG
GTCGATCATG GTGAAACTAT TGTGCTTGGT GGTATCTATC AACAGCAATT GATTAACCGA
GTGAGTAAAG TACCTGTGCT GGGAGATATT CCCTTTGTTG GCTTCCTGTT CAGGAGTACA
ACGGATGAGA ATAATAGACA GGAGTTATTA ATTTTCGTGA CTCCTAAAAT TATTTCTGAA
GACCTCTAA
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| Protein sequence | MESSAANKNF FNVSALFRLV VSLALISAGT SYAMAANRLV DVKYHSIVDH QLELQLIFEN
EIMEPEIELN ASPAEIILGF NESVSGLEKE SLPINTVGVE TIEVKQDNSV MKVVVALDKV
KAYQGKLAGN VYSLTINDEV ANSATKETNP FINGVDNIDF RRTSDGGGEL LVKLNNSSVA
ANVEQVGAKL ELKLYNTEIA SELLYVMDVQ DFATPVRSFE TFKDELTTRV LIDIAGNYEY
NYKQEGSLFR LSVTKVERVN VVKKEKKYDG RSLSLNFQSI SVRTVLQIIA DYNDFNLVTS
DTVEGDITLR LDDVPWDQAL DLILQTKGLD KRIEGNILMI APSEELAIRE SQQLKNMQEV
KELAPLYSEY LQINYAKATD IAELLKSEGS SLLSSRGSVA VDERTNTLLV KDTEDILENV
HRLIEVLDIP IRQVLIESRM VTVKDDVSEE LGIRWGVTDQ QGDKGTSGSL EGAESISNGI
VPALVDRLNV NLPASTGAAR VAFHVAKLAD GTVLDMELSA LEKEDKGEII ASPRIMTSNQ
KAAYIEQGVE IPYLEASSSG AATISFKKAV LSLRVTPQIT PDNRVILDLE ITQDSQGKVV
ATPLGSAVSI DTQRIGTQVL VDHGETIVLG GIYQQQLINR VSKVPVLGDI PFVGFLFRST
TDENNRQELL IFVTPKIISE DL
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