| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4264 |
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| Symbol | aroB |
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| ID | 5611710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5233749 |
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| End bp | 5234825 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935224 |
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| Product | 3-dehydroquinate synthase |
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| Protein accession | YP_001475996 |
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| Protein GI | 157377396 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0337] 3-dehydroquinate synthetase |
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| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00482631 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.106006 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCAAA TTCAGGTTGA TTTAGGTGTG CGAAGCTATC CAATAATTTT TAGCCAGAAT
TTGATGAGTT GTGGCGAGCA TTTTGCTCGC TACCTCCAAG ATAAAAATAT CCTTATTGTC
ACTAATGAAA CCATCGCGCC TCTTTATCTC GAGAAGCTGC AGACAGTATT ATCTTCATTC
AATTGTGTTG CCCCCGTCAT TCTACCCGAT GGAGAGCAGT ACAAAACCCT TGAACAGATG
GATAGTATCT TCACCTCTTT ATTGCAACAA AATCTAGGCA GAGATACCGT TCTTATTGCC
TTAGGTGGCG GTGTCGTCGG TGATATGACA GGCTTTGCAG CTGCCAGTTA CCAGAGAGGA
ATCGACTTTA TCCAGGTGCC AACCACATTA CTGGCTCAAG TTGACTCGTC TGTTGGTGGC
AAAACCGCTG TAAATCATCC CCTCGGTAAA AACATGATAG GCGCGTTTTA TCAGCCTAAG
ATGGTGATGA TCGATATCGA TTGTTTAAAT ACACTCCCCC CAAGAGAGTT TTCTGCTGGG
ATGGCCGAGG TCATCAAATA TGGAATAATC TGGGATGCTG AGTTTTTTAA ATGGTTGGAA
GATAATATCG AGCAGTTGAA ATCATTGGAT GCTCAAGCGT TAACCTACGC GATTGGACGT
TGCTGCGAAA TTAAAGCCGA AGTTGTTGCT CGAGATGAAA CAGAGCAAGG GGTGCGTGCA
CTCCTGAATC TGGGACATAC TTTCGGACAC GCAATCGAAG CCGAAATGGG TTATGGTGTT
TGGTTGCACG GTGAGGCAGT TGCTGCTGGC ACAGTACTTG CTGCTAATAC CGCATCTGGG
ATGGATTTAA TTGATGAGTC AATTGTTTGT CGGATAATCA AATTATTCGA AGCATTCGAC
CTACCAGTTT CTCCTCCTAA TTCAATGAAT TTTGAAGATT TCATTAGGCA TATGCGGCGA
GATAAGAAGG TACTTAAAGG TCAACTCAGA TTAGTTCTTC CTGAAGCGAT AGGCCAGGCA
GGGATCTACT GTGAGGTGAG CGATGAACTA CTGGAAACTG TTATTCGCTG CGCATAG
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| Protein sequence | MKQIQVDLGV RSYPIIFSQN LMSCGEHFAR YLQDKNILIV TNETIAPLYL EKLQTVLSSF
NCVAPVILPD GEQYKTLEQM DSIFTSLLQQ NLGRDTVLIA LGGGVVGDMT GFAAASYQRG
IDFIQVPTTL LAQVDSSVGG KTAVNHPLGK NMIGAFYQPK MVMIDIDCLN TLPPREFSAG
MAEVIKYGII WDAEFFKWLE DNIEQLKSLD AQALTYAIGR CCEIKAEVVA RDETEQGVRA
LLNLGHTFGH AIEAEMGYGV WLHGEAVAAG TVLAANTASG MDLIDESIVC RIIKLFEAFD
LPVSPPNSMN FEDFIRHMRR DKKVLKGQLR LVLPEAIGQA GIYCEVSDEL LETVIRCA
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