Gene Ssed_4258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4258 
Symbol 
ID5611587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5229187 
End bp5229894 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content45% 
IMG OID640935218 
Productphosphoglycolate phosphatase 
Protein accessionYP_001475990 
Protein GI157377390 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0125483 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCGCT GGGGAAAACT TAAAGCTATC GCTTTCGATC TCGATGGCAC GCTGATCGAT 
AGTGTGCCGG ATCTTGCTGC TGCCACCCAA GCTACATTAT CTGAGTTTGA GTTGCCGAGC
TGTACTGAAG CTCAGGTGAG AAGTTGGGTG GGAAATGGCG CCGAGATGTT GATGCGTAGG
GCACTCTCTT TTGTGCTTGA TCGTGAAGTG GAGCAATCTC TGCTCGATGA CGTGATGCCT
CGTTTTATGC ACCATTATCA AGAGCATCTT CAGCGATATA GCAAGTTATA CCCGAATGTT
TTAGCCGTAT TAGAAGAGCT AAGTTCATCC GGGTATCCGC TTGCCATTGT CACCAATAAA
CCACATCGAT TTACCATACC TCTACTGGAG GCATTTAACA TCGATCACCT ATTTTCTAAA
GTGCTTGGTG GTGATTCCCT CGACAGAATG AAACCCGATC CTTTGCCGTT AACCCACCTT
CTAAGCCATT GGCAGCTTGA GAGTGACCAG CTTTTGATGG TGGGTGATTC AAAAAATGAT
ATTTTGGCGG CTAAAGCTGC GGGTATTACT TCGATAGGCT TGACCTATGG GTATAACTAC
GGTGAAGATA TCAGTCTTAG CAGTCCCGAT GCGGTCTGTG AACAATTTAG TGAAATTTTG
ACACTAGTAA ATAATAGCGT AAAAGTATTG GAGCAAGAAA ACGTATGA
 
Protein sequence
MSRWGKLKAI AFDLDGTLID SVPDLAAATQ ATLSEFELPS CTEAQVRSWV GNGAEMLMRR 
ALSFVLDREV EQSLLDDVMP RFMHHYQEHL QRYSKLYPNV LAVLEELSSS GYPLAIVTNK
PHRFTIPLLE AFNIDHLFSK VLGGDSLDRM KPDPLPLTHL LSHWQLESDQ LLMVGDSKND
ILAAKAAGIT SIGLTYGYNY GEDISLSSPD AVCEQFSEIL TLVNNSVKVL EQENV