| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4258 |
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| Symbol | |
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| ID | 5611587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5229187 |
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| End bp | 5229894 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935218 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_001475990 |
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| Protein GI | 157377390 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0125483 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCGCT GGGGAAAACT TAAAGCTATC GCTTTCGATC TCGATGGCAC GCTGATCGAT
AGTGTGCCGG ATCTTGCTGC TGCCACCCAA GCTACATTAT CTGAGTTTGA GTTGCCGAGC
TGTACTGAAG CTCAGGTGAG AAGTTGGGTG GGAAATGGCG CCGAGATGTT GATGCGTAGG
GCACTCTCTT TTGTGCTTGA TCGTGAAGTG GAGCAATCTC TGCTCGATGA CGTGATGCCT
CGTTTTATGC ACCATTATCA AGAGCATCTT CAGCGATATA GCAAGTTATA CCCGAATGTT
TTAGCCGTAT TAGAAGAGCT AAGTTCATCC GGGTATCCGC TTGCCATTGT CACCAATAAA
CCACATCGAT TTACCATACC TCTACTGGAG GCATTTAACA TCGATCACCT ATTTTCTAAA
GTGCTTGGTG GTGATTCCCT CGACAGAATG AAACCCGATC CTTTGCCGTT AACCCACCTT
CTAAGCCATT GGCAGCTTGA GAGTGACCAG CTTTTGATGG TGGGTGATTC AAAAAATGAT
ATTTTGGCGG CTAAAGCTGC GGGTATTACT TCGATAGGCT TGACCTATGG GTATAACTAC
GGTGAAGATA TCAGTCTTAG CAGTCCCGAT GCGGTCTGTG AACAATTTAG TGAAATTTTG
ACACTAGTAA ATAATAGCGT AAAAGTATTG GAGCAAGAAA ACGTATGA
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| Protein sequence | MSRWGKLKAI AFDLDGTLID SVPDLAAATQ ATLSEFELPS CTEAQVRSWV GNGAEMLMRR
ALSFVLDREV EQSLLDDVMP RFMHHYQEHL QRYSKLYPNV LAVLEELSSS GYPLAIVTNK
PHRFTIPLLE AFNIDHLFSK VLGGDSLDRM KPDPLPLTHL LSHWQLESDQ LLMVGDSKND
ILAAKAAGIT SIGLTYGYNY GEDISLSSPD AVCEQFSEIL TLVNNSVKVL EQENV
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