| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4257 |
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| Symbol | |
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| ID | 5609646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5228183 |
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| End bp | 5229190 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935217 |
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| Product | tryptophanyl-tRNA synthetase |
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| Protein accession | YP_001475989 |
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| Protein GI | 157377389 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0180] Tryptophanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00233] tryptophanyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00294699 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTAACC CCGCCAAACC CATAGTACTT AGCGGTGCAC AACCGTCAGG TGAGCTGACC
ATAGGTAACT ATATGGGCGC ATTGAGACAG TGGGTTGCCA TGCAAGATAG CCATGACTGC
CTGTACTGTG TCGTGGATCT TCATGCCATT ACGGTAAGAC AAGATCCTAA ACTTCTAAGA
GAAGCTTGTC TGGATACGTT AGCGCTTTAT CTTGCTTGTG GTGTCGACCC TAAGAAAAGC
ACGGTATTCA TCCAGTCTCA GGTTCCACAG CATACACAGC TAGGTTGGGC GTTAAACTGC
TATACCCAGA TGGGTGAGCT AAACCGCATG ACTCAGTTTA AAGATAAGTC TCAAAAGCAT
GCGAGCAACA TCAACGTCGG TTTGTTTGCT TATCCGGTCT TGATGGCTGC CGATATCCTC
TTGTATCAAG CCAATGAGAT CCCTGTCGGA CAAGACCAGA AGCAACACCT TGAATTGACT
CGTGATATCG CGACTCGTTT CAACAATGCT TATGGCGATA CCTTCACTAT TCCAGAGCCA
TTTATTCCTG AGCACGGTGC TAAGGTGATG TCGCTGCAAG ATCCTCTTAA GAAGATGTCG
AAGTCGGATG ATAACCGTAA TAACGTTATC GGATTACTCG AAGATCCTAA GAAGATCATG
AAGAAGATTA AGAAAGCTGT GACGGATAGT GATGAGCCGC CAGTGGTTCG TTTTGACACA
GAAAATAAGC CTGGGGTATC TAATTTACTC AGCTTGATGT CGGGAGTATC GGGTAAGAGT
CTCGCCGGTC TTGAGGCTGA ATTCGAAGGC AAGATGTATG GTCATCTTAA AGTTGCAGCC
GGTGAAGCGG TTGTCGATAT GATTGAACCT CTTCAGGCCA GATACCGTGA GTTCAGAGAA
GATCAAACCT TCCTGCATCA AGTGATGCAA GAGGGGGCTG AGAAGGCTCA GGCTCGTGCA
GAAGTCACGC TGAAAAAGGT ATATGAGAAA ATTGGCTTAT TAGTATAA
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| Protein sequence | MTNPAKPIVL SGAQPSGELT IGNYMGALRQ WVAMQDSHDC LYCVVDLHAI TVRQDPKLLR
EACLDTLALY LACGVDPKKS TVFIQSQVPQ HTQLGWALNC YTQMGELNRM TQFKDKSQKH
ASNINVGLFA YPVLMAADIL LYQANEIPVG QDQKQHLELT RDIATRFNNA YGDTFTIPEP
FIPEHGAKVM SLQDPLKKMS KSDDNRNNVI GLLEDPKKIM KKIKKAVTDS DEPPVVRFDT
ENKPGVSNLL SLMSGVSGKS LAGLEAEFEG KMYGHLKVAA GEAVVDMIEP LQARYREFRE
DQTFLHQVMQ EGAEKAQARA EVTLKKVYEK IGLLV
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