| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4256 |
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| Symbol | |
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| ID | 5609645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5227218 |
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| End bp | 5228093 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935216 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475988 |
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| Protein GI | 157377388 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00267283 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGAAAAA TTCCCCCATT ACGCGCACTG CAGGTATTTG AAGCGGCGGC CAGACAGGAA
CACTTTTCCC GCGCCGCCGA TGAACTGTGT ATCACGCAAA GTGCCGTCTC TCATCAGGTT
CGGATACTCG AAGAACACTT TGGCGAGCAA CTCTTTAAAA GAGCGGGAAG ACAACTTAAA
CTGAGCCCTA AAGGGGAGTT ACTCTACAGC GAGCTATCTC GTATTTTTAA TGAGTTAAGT
GATCTGAACC TGCAGATATC GGGTGGTGAG AGTCAGGAGC TCAGACTCGC TGTTTATAGC
TCATTTGCGG TGAAATGGTT AATTCCCAGG CTCAGTGATT TCAGACGTCG ATACCCTGAC
ATAAAAATTC GTCTGGATAT GATCACCGAC GATCCTGAAC TATCTGATAG CGTCGCCGAT
ATGTTTATCA GCGGACAGAG TAATCATCCG GGGTTTTGGC ATCAGTTACT TCATAAGGAA
CGGCTGATAC CCGTTTGCAG CCCGGATCTA TTCGCCAGAG GAGAAACTGT GCTCATCGAG
TCTTTATGGC GATACCCATT ACTCACAGTA GATGAAGGGC CTCTGGGACT GGACTGGAAC
CGTTGGAGTA TAGCCAATGC GCTACCTTTC CCCGACGATT TTCAGCAACA TATCTTCAGT
CATGTACTAC TCGCCATCGA AGCCGCAATC GCTGGTCAGG GCATCGCATT AGCCTCCGAC
TTCATGGTTG TCAATGACAT AGAGAAGGGG CGTTTAATTG CACTGGACCT ACCGGACATA
TTCACAGGCT TCAAGTTCAA CTTCAGCTGT AAACAGCGAA GGCTGAAAGA GCCGGCCATC
GCAGCCTTCA TCGAATGGAT TAGCGCTCAA AAATGA
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| Protein sequence | MRKIPPLRAL QVFEAAARQE HFSRAADELC ITQSAVSHQV RILEEHFGEQ LFKRAGRQLK
LSPKGELLYS ELSRIFNELS DLNLQISGGE SQELRLAVYS SFAVKWLIPR LSDFRRRYPD
IKIRLDMITD DPELSDSVAD MFISGQSNHP GFWHQLLHKE RLIPVCSPDL FARGETVLIE
SLWRYPLLTV DEGPLGLDWN RWSIANALPF PDDFQQHIFS HVLLAIEAAI AGQGIALASD
FMVVNDIEKG RLIALDLPDI FTGFKFNFSC KQRRLKEPAI AAFIEWISAQ K
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