| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4253 |
|---|
| Symbol | |
|---|
| ID | 5610119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5224911 |
|---|
| End bp | 5225504 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640935213 |
|---|
| Product | phosphoheptose isomerase |
|---|
| Protein accession | YP_001475985 |
|---|
| Protein GI | 157377385 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0279] Phosphoheptose isomerase |
|---|
| TIGRFAM ID | [TIGR00441] phosphoheptose isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00003184 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAC GTATTAAAGA TAGTTTTACA CACTCAATTC AAACCAAGAT CGATGCCTCA
GAGGCACTAC CTGAGTCTAT TGCCAAAGCG GCAGAGATGA TGGTCCACTG TCTATTAGGT
GGAAATAAAA TTCTGGCATG TGGTAATGGC GGTAGCGCCG GCGATGCACA ACACTTTTCG
GCAGAGCTGT TAAACCGCTT TGAAGTTGAG CGTCCTCCCC TTCCAGCCAT CGCACTGACA
ACGGATACCT CTACGATCAC AGCCATCGCG AATGACTATA GCTATGACGA GATCTTCTCT
AAGCAGATCT TAGCATTGGG ACAGCCTGGT GATATTCTAC TGGCTATTTC AACCAGTGGA
CACTCCGGCA ATGTGATCAA AGCGATTGAA GCTGCATTGA GCCGTGACAT GACTATCGTG
GCTCTGACCG GTAAAGATGG TGGCCCAATG GCAGGCTTAC TCAGCATCAA CGATGTTGAA
ATTCGTGTGC CTTCTAACAG CACGGCTCGC ATTCAGGAAG TTCACCTGCT TGCCATCCAT
TGCCTGTGTG ACAATATCGA CCGCACTCTA TTCCCTCAGG ATGAGCAACA GTAA
|
|---|
| Protein sequence | MLERIKDSFT HSIQTKIDAS EALPESIAKA AEMMVHCLLG GNKILACGNG GSAGDAQHFS
AELLNRFEVE RPPLPAIALT TDTSTITAIA NDYSYDEIFS KQILALGQPG DILLAISTSG
HSGNVIKAIE AALSRDMTIV ALTGKDGGPM AGLLSINDVE IRVPSNSTAR IQEVHLLAIH
CLCDNIDRTL FPQDEQQ
|
|---|
| |