| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4252 |
|---|
| Symbol | |
|---|
| ID | 5610118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5224485 |
|---|
| End bp | 5224838 |
|---|
| Gene Length | 354 bp |
|---|
| Protein Length | 117 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640935212 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475984 |
|---|
| Protein GI | 157377384 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0792] Predicted endonuclease distantly related to archaeal Holliday junction resolvase |
|---|
| TIGRFAM ID | [TIGR00252] conserved hypothetical protein TIGR00252 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000137469 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATA ACAACGAGCC GATATCTGCA GAGCATGGCC AAGCAGGTGA AAACCTGGCT
ATGAATTACC TGTTAGAGCA AGGGCTGACA TTCATCGAGC GAAATGTCCG ATTCAAATTC
GGGGAGATTG ATCTCGTCAT GAAAAATGGC AAAGAGTGGA TCTTCGTCGA AGTAAAGTAT
CGCTCAAAAA GCCAATATGG CGGCGCCATA AATGCGTTAA GCTCAGGGCA GATAAAGAGA
CTGAGACGTG CAGCGGAGCA TTATATGCAG CTCAACAATA TCGATGCCAT CTGTCGATTC
GATCTAATCG CTGTAGATGC GGGCCAGATA CAATGGCTAC CTAATGCTTT TTAA
|
|---|
| Protein sequence | MMDNNEPISA EHGQAGENLA MNYLLEQGLT FIERNVRFKF GEIDLVMKNG KEWIFVEVKY
RSKSQYGGAI NALSSGQIKR LRRAAEHYMQ LNNIDAICRF DLIAVDAGQI QWLPNAF
|
|---|
| |