| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4250 |
|---|
| Symbol | |
|---|
| ID | 5609596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5221678 |
|---|
| End bp | 5222520 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640935210 |
|---|
| Product | uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase |
|---|
| Protein accession | YP_001475982 |
|---|
| Protein GI | 157377382 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0313] Predicted methyltransferases |
|---|
| TIGRFAM ID | [TIGR00096] probable S-adenosylmethionine-dependent methyltransferase, YraL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.150216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000249407 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGG CGGTCGCACT TTACATAGTT CCAACCCCTA TTGGTAACTT AGGGGATATC
AGTTCCCGTG CCATAGATGT GCTCAATAAT GTCAAATTGA TAGCCTGTGA GGATACCCGA
CATAGCGGTA TTCTTTTGAG CCATTTTGGA ATAGAAACAA GAAAAACAGC CCTTCACGAT
CACAATGAAC GAGACAGAGC CGATTGGATC ATTCAGAAGC TCAGTAACGG TGAGGCCGTT
GCGCTGATCT CTGATGCAGG CACGCCGTTG ATCTCCGATC CCGGCTACCA TCTTGTCTCC
GCAGTAAGAA ATGCAGGCTA TAAAGTGATT CCGCTACCGG GCGCATGTGC TGCGATCACC
GCACTGAGTG CATCGGGCCT GCCATCGGAC CGTTTCACCT TTGAAGGCTT TTTACCCTCA
AAAGAGAAGG GACGAATCGA TAAACTAACT GAGCTTAAAG AAGATCCAAG AACCTTGATC
TTCTACGAAT CCCCACACCG TATAGTCCAT AGTTTAGAGT CAATTCTTAC TGCATTGGGT
GAAGATCGTG TCATTGTGAT GGCGCGTGAA GTGACCAAAA CCTTTGAAAC CTTCCTGTGT
GGAACGGTTA AAGAGGTATT AGAGCAGGTG AAAGCGGATC CTAATCAGCA GAAAGGTGAA
ATTGTGCTGA TGTGCCACGG GTATCGCCTT GCCGAAGATG AAGGCATCCC AACGGTTGTG
ATCAATACAT TAAAGCTGCT TTGCGAAGAG TTGCCTTTGA AGAAGGCGTC GGCATTAGCT
GGACAGATCC ACGGCATGAA AAAGAATGCC CTCTACAAGT ATGGTCTTGA AAACGGCCTG
TAA
|
|---|
| Protein sequence | MDLAVALYIV PTPIGNLGDI SSRAIDVLNN VKLIACEDTR HSGILLSHFG IETRKTALHD
HNERDRADWI IQKLSNGEAV ALISDAGTPL ISDPGYHLVS AVRNAGYKVI PLPGACAAIT
ALSASGLPSD RFTFEGFLPS KEKGRIDKLT ELKEDPRTLI FYESPHRIVH SLESILTALG
EDRVIVMARE VTKTFETFLC GTVKEVLEQV KADPNQQKGE IVLMCHGYRL AEDEGIPTVV
INTLKLLCEE LPLKKASALA GQIHGMKKNA LYKYGLENGL
|
|---|
| |