| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4243 |
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| Symbol | |
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| ID | 5611275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5211806 |
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| End bp | 5212735 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935202 |
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| Product | phage integrase |
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| Protein accession | YP_001475975 |
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| Protein GI | 157377375 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000426285 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAATAATC AAACTCCTAC GGCGTTGTTT TTGTCACGCC TTGCGCCCAG TGGACGTAGA
CCGCTGCGCA GTCAGCTAAA CACAGTACTC AAGCTTTTCA AGTGGAAAGG TGAAGTTGAA
GCACTGCCAT TTCATACATT GAACTACGCA CAAATTGAAT ACGTTAAACG GCATAAGCTA
GATGAGGGCA AGTCACCCCG AACCGTCAAC TTAGTGCTGT TCGCACTCAA GGCCATAGTT
AAGACAGGCT TCTTGATGGG AGTGGTGGAC GATGTTCAAT GGCGACAGGT GCAAGCGGTT
AAGCGGCTAC CTATCAACCC AAGTAGTCGA GGTAAGGCGT TATCATCCAG CAGTGTTGGC
CAGTTGATCA CCATCTGTTA TCTGGACAAG CGGTACATCG GCAAACGGGA CTGCTGCATA
TTGGCATTGT TTCTGAGTAC TGGCCTAAGG CGCTTTGAGT TAGCCAACCT GACAGTCAGT
GATATCCACC TTGATAAACG CACCTTAACG GTCAAGTCTG GCAAGGGTAA GAAGCCGCGC
AAGCAACCGA TACCCACATG GGCGTTAACC TATATCGACA ATTGGCTAAG GGTGAGAACC
CATCAACCAG GGGACTTGTT TAATCCCATT TGGAACAATG TCATTAAGCA TGACCGTGGC
CTCAGCAGTG CCGCCCTCTA TCAGATTGTC AAAGCACGTA CCTTAGCCGC CACAGGCATC
ACCATTTCAC CACACGATTT ACGCCGAACG TTCATTACCG AACTACTCAA TCAGAAGGTC
GATTTAAGTA CCGCAAGCAA ACTGGCTGGC CATGCTAACG TCACCACCAC ACAAATCTAT
GACAAGCGTG ATGAATCGGT GATGAGAGAG GCCATAGACC AACTGAACTA TCAACTAAAT
GGCCAGCTAG ATGGAGGTCA ACATGACTAG
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| Protein sequence | MNNQTPTALF LSRLAPSGRR PLRSQLNTVL KLFKWKGEVE ALPFHTLNYA QIEYVKRHKL
DEGKSPRTVN LVLFALKAIV KTGFLMGVVD DVQWRQVQAV KRLPINPSSR GKALSSSSVG
QLITICYLDK RYIGKRDCCI LALFLSTGLR RFELANLTVS DIHLDKRTLT VKSGKGKKPR
KQPIPTWALT YIDNWLRVRT HQPGDLFNPI WNNVIKHDRG LSSAALYQIV KARTLAATGI
TISPHDLRRT FITELLNQKV DLSTASKLAG HANVTTTQIY DKRDESVMRE AIDQLNYQLN
GQLDGGQHD
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