| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4237 |
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| Symbol | |
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| ID | 5614028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5202182 |
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| End bp | 5203441 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935196 |
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| Product | putative glycine betaine ABC transporter ATP-binding protein |
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| Protein accession | YP_001475969 |
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| Protein GI | 157377369 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
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| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0562206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000629838 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACTAACG AATCACAAAC AGAGCCGCTC ATTCAGATTA AGGATCTCTT TAAGGTCTTT
GGCAAAAAAC CAGCCAAAGT CATGCCTATG GTTAGAGATG GTTTATCCAA GGATGAGATC
CTGGCGAAAA CCGGCCATAC AGTGGGCCTT AAAGCCATCA ACCTCGACAT TCACCAAGGT
GAGATCTTTG TGATCATGGG GCTATCTGGC TCGGGGAAAT CTACCTTAAT CCGCCACTTC
AACCGGCTGA TCGACCCCAC AGAGGGGCAA ATTCTGGTTG AAGGCATCGA TGTAATGAAG
CTCAATACCA AAGAGTTGGA GCAATTTCGT CGCAATAAGA TGGCAATGGT ATTCCAACGC
TTTGGTTTAA TGCCCCATAA AAGCGTACTG GAAAATGTCG CCTATGGTCT CAGTGTTCAG
GGGATAGACA AAGTCACCAG AAACGCCAAA GCCACCCAAT GGCTTGAAAC AGTCGGTCTG
GCTGGATATG AAGATCAGTA CCCGTCCCAG CTGTCCGGTG GTCAGCAACA GCGTGTCGGT
CTGGCAAGGG CCCTGTGTAC CGATGCAGAG ATCCTGCTGA TGGATGAGGC ATTCTCGGCA
TTGGACCCCT TGATACGCAG TGAAATGCAG GATCAACTGA TTGAGCTGCA AAAAGAGTTA
CATAAGACCA TCATCTTTAT TACCCACGAT CTCGACGAAG CACTGCGAAT TGGCGACCGG
ATCGCGATCC TCAAAGATGG CAATCTGGTT CAGGTTGGCG AGCCGGTGGA TATCTTACTC
AACCCTGCCG ACGACTATGT CGAAGCCTTC GTCAAAGACG TAAACCGTCC GCGAGCCCTG
ACTGTCGAGA CCGTCATGAA GCCGCCCGCA TATCGTCTTA CCGCCGACAC TATAGGTGAA
GCACTCAAAC AGATGAAGCG TATCCCGGCT AACTATGCCT ATTACGTTAC CGATGAGGGG
TTCCAGGGCG TTGTGTGCCA GGAGGCACTG GAAGATGCCG TCAAGACAGA TAAAGAAGCG
CTGATGGAAG ACTTCAAGGT AGAGGAGATG ACACCGATAT CACAGGATGC GCTGCTTGAA
AGCATCATTC CGGCAACCAT GGAGTCAGAC TTTCCCCTGC CTGTTATCGA TTCCGATGGA
GACCTGCAGG GTGAGCTTTC CCGTACTCAT CTGGCCGACG TGCTATCTGA CTTCTACACC
GATGGTGCTG ACGACAGCGC TGACGCAGAA AAACAAAACT CAACCAAAGA GGATAAATGA
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| Protein sequence | MTNESQTEPL IQIKDLFKVF GKKPAKVMPM VRDGLSKDEI LAKTGHTVGL KAINLDIHQG
EIFVIMGLSG SGKSTLIRHF NRLIDPTEGQ ILVEGIDVMK LNTKELEQFR RNKMAMVFQR
FGLMPHKSVL ENVAYGLSVQ GIDKVTRNAK ATQWLETVGL AGYEDQYPSQ LSGGQQQRVG
LARALCTDAE ILLMDEAFSA LDPLIRSEMQ DQLIELQKEL HKTIIFITHD LDEALRIGDR
IAILKDGNLV QVGEPVDILL NPADDYVEAF VKDVNRPRAL TVETVMKPPA YRLTADTIGE
ALKQMKRIPA NYAYYVTDEG FQGVVCQEAL EDAVKTDKEA LMEDFKVEEM TPISQDALLE
SIIPATMESD FPLPVIDSDG DLQGELSRTH LADVLSDFYT DGADDSADAE KQNSTKEDK
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