| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4234 |
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| Symbol | |
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| ID | 5613410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5198442 |
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| End bp | 5199650 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935193 |
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| Product | NADH dehydrogenase |
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| Protein accession | YP_001475966 |
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| Protein GI | 157377366 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1252] NADH dehydrogenase, FAD-containing subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000637603 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTCGTG TTGTAATTGT CGGCGGTGGC GCCGCAGGAC TAGAGCTGGC CAGTATCTTG
GGCCGCTCGG TAAACTGTCA AGATGAAGTG ATCTTAGTGG ATGGTGAGAC TCACCACTAC
TGGAAACCCA GGTTTCATGA AATAGCCGCC GGAACTTTCG ATAACGATCT CGATACTCTG
TGCTACTTCA GCCATGGCGC AAAAAACGGC TATATGCATT ATCAAGGCTG GATGACTGAC
ATCAAACGCG AAGAGAAACA GCTAGTCGTA AGTAAGCCCA ACGGTGAAAC GGATTTCGTC
AACTATGACT ATCTGGTTAT CGCCATAGGC GCGATTAGCA ATGATTTTGC TACCCCAGGG
GCGCTAGAGC ACTGTCTATT TTTAGACTCG CCGGAGCAAG CACGCAGCAG TTGGCTGCAA
ATTAGCTCAC TGTTACGCTC CGGACACCAG CGTGCAATAA ACATCGTTGG TGCGGGTGCG
ACCGGTCTCG AACTGGCCGC CGAGCTAGCT AAAGTTAACG CCGGGTTAGA ACCAAACCCA
CATGCGGCTA AACTCAAAAT CAACCTGATT GAAGCTACCG ACAGAGTCCT ACCCAACAGC
CCGTTAAAGA TGTCCCATCA GGCACAGCTG ATGCTGGAAA AATATAATAT CAATGTCATG
CTCAATACCC GAATTGCCAG CGTTGAGCAG CAAGGTATGA CCACCAGTGA TGGGCTCACT
ATCAGTGCCG ACATTCAGTT TTGGGCCGCG GGCATTAAAG CACCTAATTG GTTGAAAAAT
ATCGGTGGCC TTGAGAGCAA TAGCTTCAAC CAGCTTATGG TACAGCAAAC ATTAGCCAGC
ACCCTTGATC CAAATATTTT CGCTCTGGGT GACTGTGCCG CGATCCCGCA AGGCGAAGGT
GTTATGGTAC CTCCTAAGGC TCAGGCAGCA AATCGTGCAG CGGTACACTT AGCCAAAAGC
TTAACCGGAT TAATGAGGGG TAAACAGCTC ACGCCTTTCA TCTATAAAGA TGGCGGCATG
GTCGTCGCGA TAGGCCATAA CTTCGCTATC AGTACCATGA TGAATGACAA ATTGATCTTA
AAGGGCCGCG TAATTCGCCG CCTCTACGAC ACAATTTTCC GCTTACATCA AAAGACGGTC
AGCGGCGTAT TGACCATGTC GCGCCTGATC ATAGCGAAGC GACTTAAATG CATTTTCCAG
CCTAATTAA
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| Protein sequence | MSRVVIVGGG AAGLELASIL GRSVNCQDEV ILVDGETHHY WKPRFHEIAA GTFDNDLDTL
CYFSHGAKNG YMHYQGWMTD IKREEKQLVV SKPNGETDFV NYDYLVIAIG AISNDFATPG
ALEHCLFLDS PEQARSSWLQ ISSLLRSGHQ RAINIVGAGA TGLELAAELA KVNAGLEPNP
HAAKLKINLI EATDRVLPNS PLKMSHQAQL MLEKYNINVM LNTRIASVEQ QGMTTSDGLT
ISADIQFWAA GIKAPNWLKN IGGLESNSFN QLMVQQTLAS TLDPNIFALG DCAAIPQGEG
VMVPPKAQAA NRAAVHLAKS LTGLMRGKQL TPFIYKDGGM VVAIGHNFAI STMMNDKLIL
KGRVIRRLYD TIFRLHQKTV SGVLTMSRLI IAKRLKCIFQ PN
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