| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4228 |
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| Symbol | |
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| ID | 5611437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5193482 |
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| End bp | 5193739 |
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| Gene Length | 258 bp |
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| Protein Length | 85 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935187 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475960 |
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| Protein GI | 157377360 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1734] DnaK suppressor protein |
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| TIGRFAM ID | [TIGR02419] phage/conjugal plasmid C-4 type zinc finger protein, TraR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00312261 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | GTGGTTGGTC TAAAGACGGC GCTACAAGAT CAAATAGATA ATAGTGTTGA GGATGGCGTC
GCCCAAGCCA GGAGTCGATT GCCAGTCGGT CAAAGTCTAC TTTTTTGTGA GGAGTGTGAA
AGCCCAATTC CTGAGGCACG CAGAAAAGCC GTTACAGGTG TTCGACTCTG TGTTGCCTGC
CAGAGTGAGT CGGATAAGCG ACAAAACGAT CTGAGCAAGG TTAATCGCCG TGCCAGTAAA
GATAGTCAGT TGAGATGA
|
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| Protein sequence | MVGLKTALQD QIDNSVEDGV AQARSRLPVG QSLLFCEECE SPIPEARRKA VTGVRLCVAC
QSESDKRQND LSKVNRRASK DSQLR
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