| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4211 |
|---|
| Symbol | |
|---|
| ID | 5611917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5173529 |
|---|
| End bp | 5175745 |
|---|
| Gene Length | 2217 bp |
|---|
| Protein Length | 738 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640935170 |
|---|
| Product | molydopterin dinucleotide-binding region |
|---|
| Protein accession | YP_001475943 |
|---|
| Protein GI | 157377343 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTA ACAGACGCAC ATTCCTGCAG GGAGTCGGAG CCAGCTCGGT TGTTGGCTCT
CTCTCAGGCT TGATGCCCGG CATTGCCAGT GCTACGGAAC AACGTGGCGG CGCGCCTGAT
AAGTTACTCA AGCGTGAAGG TAAAATTGTA TATCACACTT GTCAGCGTAA CTGTGCAGAC
CGATGCTTAC TTAAATTTAC CGTACAAAAT GGTCGTATGA CCTATGTTGA AGGTGCTTCA
GAGATGAAGA AGATGGGCAC CTCTCCATGC GTTAAAGGTC ATGCTTATGT GCAGTACACC
TATGCAGCAG ACCGTATCTT ACATCCGATG GAACGTGCGG GTGAAAAGGG CGAAGGCAAA
TGGCGTCGTA TCTCATGGGA TGAAGCCTAT GCAAAGATCA GCGCTCGCTT AAAAACGATC
ATTAAAGAAC ATGGCGCCGA TTCGATTCTG CCATACAGCT ACTCGGGTCA TGAAGGTGTT
ATCGGTAAAT ACGGCGGACC AAGCCGCTTC TTCAACGCCG TTGGTGCACG TAAACTCGAC
CGTAAGGTTT GTGTATTCGC CGCCTATGAA GGTCTTAAAT CTGTGACCGG TACTTACCAA
GGTCCAGATC CATACGACAA TATCTACACC AACTGTTATA TCTCTTGGGG TCAGAACGAA
ACGGCAACTA ACGTTCACGG CATCAAGTTC ATCAACCAGG CGCGCGACAA AGGTGCAAAG
TTATTGGTAG TGAACCCAAT ACGTACGCCT ATCGCGTCTC AGGCTGATAT CTGGTTACAG
CCAAAACCAA GTACAGATAC CCATCTTGCT ACCGGTATCA TGAAGTACCT GATTGAAAAC
AATTTAGCCG ATACTAAGTT TATCGAAGCT AATACTATTG GTTACCAAGA CCTGCTTAAA
CGTATAGACG AAATGAGCTA CGACGAAATT GAGCGAGTCA CAGGCGTACC AAGAGAGAAG
ATGTTCAAGT TCGCCAAGGT CTACGGTGAG TCAGAGCTAT CTGTACTGCG TCTGGGTTAT
GGTATGCAGC GTAACTACAA CGGTGCACGT ATGTCTCGCG CTATCGCGAT GATGCACGCC
GTTGCGGGTC AGTACGGTAA GATTGGTAAC GGTTTCGTTT ACGATAACAC CCAAGCCGAT
GACAGCTTAA ACTACTCTAA GGGTCGTGCC GACCATATCC ATCCACATGG CGATACGGTA
GGTCATGTGA ACATGACGGA GATCGCCAAG GCGATTCACC CGACTAACCC GACTGCCTAT
GGCAAACCAA TCAAGCCTAT CAAGGCGGTG ATTAACTACA ATGGTAACTT CGTCTCTGTT
GCTCCAGATT CGAATGCCTG TCGTCGCGGC GCGATGCGTG ACGATCTGTT CTTAGTCGTT
CATGATTTCT TGATGACAGA TACGGCCGAG TTAGCAGATA TCATCGTACC GTCAACTACA
CAGTTCGAGT TCCCTGATAT GGGTACCGAT TACAACTGTT ACCACATGCA AACGTCTGAG
AAAGTGATTG AGCCTTTAGG TGAATCTAAA GATAACTGGA TCTTCTTCAA AGAGTTAGCC
GCTCATATGG GACTGGATCA TCACCCAGAG ATGCGTGTCG ATTATGAACA GATTCTTCGT
GATTTCTTAG ACACCGAAGA GCCAGCGTTC AGACACAACA ACATCACTTA CGAGCAGATC
ATCGAAGAGA AGTTCGTCAC CGTTTACGAT CAACGTCCTT ACTTCGGTGA TGGCAAGTAT
AAGACTGACA GTGGCAAGAT TGAGTTTTAT TCTCAGATGA TGATTGACGC CGGTTACCAT
CCAGTTCTTG ACTTTGGACT GCCGGAAGAT GAGATGATCC CGGAAGAGAA AAACTTGCCT
TTCCGCATGT TATCTCCTGC GATCCCTCAA CGTGCCAACA GCTCTTTCTA CAACGTGAAG
TATATTCGTA ACTTCCCTGC CTATTTCGCC AAGGTCAATA ACGAAGATGC CAAAGAGCTT
GGGATTAAGA ATAATGACAG AGTCAGACTC AGTAACCACC GTGGTGAAGC TTTCTTCATC
GCACAGGTTT CGAGTCAGGT TGGCCGCGGC ACCGTGATGG CGCCCAAGAA CAACTGGCGC
CGCATGGACC CACAGGGCAA AGCCAGTTGT ACCAACAACC TCACCACCGA CAAGTTAACC
GATATGGGCG GGTGCTCTGC CTACCATTCG ACTAATGTCG CGATAGAAAA AGCCTAA
|
|---|
| Protein sequence | MKINRRTFLQ GVGASSVVGS LSGLMPGIAS ATEQRGGAPD KLLKREGKIV YHTCQRNCAD
RCLLKFTVQN GRMTYVEGAS EMKKMGTSPC VKGHAYVQYT YAADRILHPM ERAGEKGEGK
WRRISWDEAY AKISARLKTI IKEHGADSIL PYSYSGHEGV IGKYGGPSRF FNAVGARKLD
RKVCVFAAYE GLKSVTGTYQ GPDPYDNIYT NCYISWGQNE TATNVHGIKF INQARDKGAK
LLVVNPIRTP IASQADIWLQ PKPSTDTHLA TGIMKYLIEN NLADTKFIEA NTIGYQDLLK
RIDEMSYDEI ERVTGVPREK MFKFAKVYGE SELSVLRLGY GMQRNYNGAR MSRAIAMMHA
VAGQYGKIGN GFVYDNTQAD DSLNYSKGRA DHIHPHGDTV GHVNMTEIAK AIHPTNPTAY
GKPIKPIKAV INYNGNFVSV APDSNACRRG AMRDDLFLVV HDFLMTDTAE LADIIVPSTT
QFEFPDMGTD YNCYHMQTSE KVIEPLGESK DNWIFFKELA AHMGLDHHPE MRVDYEQILR
DFLDTEEPAF RHNNITYEQI IEEKFVTVYD QRPYFGDGKY KTDSGKIEFY SQMMIDAGYH
PVLDFGLPED EMIPEEKNLP FRMLSPAIPQ RANSSFYNVK YIRNFPAYFA KVNNEDAKEL
GIKNNDRVRL SNHRGEAFFI AQVSSQVGRG TVMAPKNNWR RMDPQGKASC TNNLTTDKLT
DMGGCSAYHS TNVAIEKA
|
|---|
| |