| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4206 |
|---|
| Symbol | |
|---|
| ID | 5611883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5164940 |
|---|
| End bp | 5166439 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640935165 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475938 |
|---|
| Protein GI | 157377338 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAT TATTAGAATT GACGAGTGAA GAGGCTAAGC AGCATTTTCT CAAAGATAGT
AGCTATTTTA ATGGTGACCT GCCTAATTAC ATTAGCTTCG CACCAGTACT GGAGAAAGTC
GATTCGGAGC TCAATGGTAG ACCATTTAGT CAGTTTAAAA ACGGGAAATC TCCTTCAGAT
TGTGATGACG TTAACTATAA CCTCATTACC AACAAAGATG GCAAGCTATC TTGGCGTCCA
TATGAGCTCA TCCACCCAAT TATTTATGTA GCCTTACTCG ATGTTGTTTG CAAAGAAGAA
AATTGGGCTT TTATTGTCAA ACGCTTCAAA GAGTTTGAGT CCAGTATTAT TGAATGCTGT
AGCCTACCAG TCCTATCGCA AGACACAGAT AAAGATCAGG CTGCACAAGT CAAAAACTGG
TGGCAAGCTG TAGAACAAAA ATCACTAATG TACTCTTTGG AGTGCACCAA TGTTCTGCAC
ACGGATGTGA CGGATTGCTA TGGCTCAATA TATACGCATA GCATTGTTTG GGCCCTTCAT
GGCAGGCAAG TAGCTAAAGA AAAGAAGAAA GACAAGTCAT TACTGGGTAA TGCTATCGAC
TTTCATATTC AATCTAGTCG AGCAGGGCAG ACAAATGGTA TCCCTCAAGG CTCTGCCTTG
ATGGACTTGA TAGCAGAAAT GGTTCTAGGC TATGTTGATG AGCTTATCAG CGAAGAATTA
AATACTTTTA CAGACTTCAA GATACTTCGC TATCGAGACG ACTATCGAAT ATTTTCAAAT
AGTAATGATA AGTCCGAAGA AATTCTCAAA ATCATTAGTG ATAAATTGAG AGTGGTGGGT
ATGAAACTCG GAGTAGCTAA AACCTTTCTT AGTTCAAATG TAGTCTCGGG GTCAATTAAA
CCGGATAAAT TAGCGGGTAT TGAACTTCAG GATTTAGGCG TAGCAAATGC AAAAACAATC
CAAAAGCAGC TTCTTCGCTT ACATTCATTT GGTATTAAAT ATCCCAATAG TGGTGCTCTG
AAGAGACTTG TCAGTGAGTT TCATTCATCG GTAGTCCAAC AAAAAGAGGC TCCTGATGAT
CTTGAGGTTC AAGTCGCGAT TGCTACTGAT ATTGCGTTCG TGTCTCCAGC AACGTTCCCA
GCTGTTGCTG GTATCTTAAG CCACTTGATT TCACTTGCTG TACCAGAGCA AAAGAAAGAT
TTGTGGGAAA AAGTTCGTAG TAAAATGTCT CGCATACCAT ATAACGGTTA TCTAGAACTT
TGGTTGCAAA GGGTTATCAA ACCCAAAAGT GTTGGTGTTG AATTCGCAAG TGAAGAGCCA
ATATGCCAAA TAGTTGATGG TAAATCTCAC GGTTTATGGA ACACCGAATG GACTTCAAGT
AAAAAGTTAC TTAAAGCGTT AGATACAATA TCGATTGTTA TAGCTGATGC TGAAGATGCA
GAGGAAGTTA TTCAACCATC AGAAGTTGAG TTGTTCATTA AAAATGCGTT GTCCTATTAG
|
|---|
| Protein sequence | MKQLLELTSE EAKQHFLKDS SYFNGDLPNY ISFAPVLEKV DSELNGRPFS QFKNGKSPSD
CDDVNYNLIT NKDGKLSWRP YELIHPIIYV ALLDVVCKEE NWAFIVKRFK EFESSIIECC
SLPVLSQDTD KDQAAQVKNW WQAVEQKSLM YSLECTNVLH TDVTDCYGSI YTHSIVWALH
GRQVAKEKKK DKSLLGNAID FHIQSSRAGQ TNGIPQGSAL MDLIAEMVLG YVDELISEEL
NTFTDFKILR YRDDYRIFSN SNDKSEEILK IISDKLRVVG MKLGVAKTFL SSNVVSGSIK
PDKLAGIELQ DLGVANAKTI QKQLLRLHSF GIKYPNSGAL KRLVSEFHSS VVQQKEAPDD
LEVQVAIATD IAFVSPATFP AVAGILSHLI SLAVPEQKKD LWEKVRSKMS RIPYNGYLEL
WLQRVIKPKS VGVEFASEEP ICQIVDGKSH GLWNTEWTSS KKLLKALDTI SIVIADAEDA
EEVIQPSEVE LFIKNALSY
|
|---|
| |