Gene Ssed_4205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4205 
Symbol 
ID5611882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5164209 
End bp5164775 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content50% 
IMG OID640935164 
Producthypothetical protein 
Protein accessionYP_001475937 
Protein GI157377337 
COG category[S] Function unknown 
COG ID[COG2930] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGT TCATCTCAGC CATCTCTATC GCAACCTGTT TTATCGCCAC GATTTTCGCG 
ACCCAGGTTG CCGCTGCCGA TGACAGTTAC TCTGAAACTA TTGCGAATTT TAAACAAGCC
AGTGACACCC ATAAATTTTT CAATAACGCC TATGGATACG CCCTATTTCC TACCGTAGGA
AAAGGTGGGT TCGGCATAGG TGCCGCCTAC GGTAAAGGGC GGGTTTATAA AGGTAACAGC
TATACGGGTG ATACCAGCCT CTCTCAGCTA TCTCTTGGCT TTCAGATTGG CGGCCAGGCC
TACAGCGAGA TAATCTTCTT TAAAGATGCC AAAGCTTATA ACGAGTTTAC CAGTGGCAGC
TTCGAATTTG GCGCTCAGGC CTCCGCCGTA GCGATAACCA TAGGCGCTAA CGCCCAGGCC
GGAACCACAG GAAATTCCAG CAGCGCAGGC AAGGCTGCGG CAAAAGCGGC CTATATCAAC
GGCATGGCGG TATACACCTT AGCCAAGGGT GGCCTGATGT TTGAAGCAGC CCTTGCGGGA
CAGTCATTTA CCTTCGAAGA GAAGTAG
 
Protein sequence
MKKFISAISI ATCFIATIFA TQVAAADDSY SETIANFKQA SDTHKFFNNA YGYALFPTVG 
KGGFGIGAAY GKGRVYKGNS YTGDTSLSQL SLGFQIGGQA YSEIIFFKDA KAYNEFTSGS
FEFGAQASAV AITIGANAQA GTTGNSSSAG KAAAKAAYIN GMAVYTLAKG GLMFEAALAG
QSFTFEEK