Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4204 |
Symbol | |
ID | 5611881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5161997 |
End bp | 5164063 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640935163 |
Product | peptidase S9 prolyl oligopeptidase |
Protein accession | YP_001475936 |
Protein GI | 157377336 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAAGGG CAAATAAACT CACCGTGTTG GCCATGATTT CGGCCGGACT TTTTTTAGGT GGCTCGGCAA ACGCGTTAGC CTCGCAGCGA ACTCATCAAA TCACCACCGA TGATTTTTTC GATATTGGGG GGATGAGTAG CGTACAGTTA AGCCCCGACG GAAAACAGGC CGTCTGGCTC GAGACGCGTT GGGATAAAGA GCTGGATAAA TCCCAGCGAG ACCTATGGCA GGTTAACACC AAAAACAAAA AAACCACTCG CCTAACCTTC ACCAACGAGA GTGAGTCCAG CCCACAGTGG AGCGGCGATG GTCAGTATAT CTACTATATT GGCAAGGTGA CCCATGAAGA CAAGAAAGCC CCTTACAATG GTAAGAGCCA GGTCTTTCGT ATCAACCGAG ATGGCGGCGA TGCCGTGCCC GTGACCAAAG AGGTTGAGGG GGTCAGTTCA TTTTCACTCA GTCCCGATGG TAATACCCTC TATTTCTTAG GCAGCAAGAC GGTCAAAGAT AAAGATGAGT GGGCGTCTAT GCGTGCAGGC CACAGCGCGC CTAAATACGC CCATGGCGAA AGAAAAACCA ACCCACTGTA TAAGCTAGAT CTCCAGCATT TCAAACAGCA ACTCATTCTG GATGATGACA AAGTCGTATG GAATTTCAGT GTCAGCGATG ATGGCAGTAA AGTTGCCCGA ATCACGACAT CAGATAACGA GCTGGTCAAC CTCGAGGGTT GGTCTGATAT CGAAATTTAT AATACCCGGA GCAAGAGCAA CGAGGTTCTG GAAGATACGG CATGGCGCGA ACAGGCTCCA TCGCCCTATG GCTGGCTACT CGGACTCGAT TGGCACTCAG ATAACCAACA GCTCGCCTTT CGTATCGACT TCGATGGCCA TCCGGGCAAG CTGTTCGTCT CCAATACTAA GACCAAGTCA CTGACCGAAG TGACGCGTAT CGATGATGTG ACGCTAAACT CGTCAGATAT TCACTGGCGC CCAAACAGTG ATGAGCTCTG CTACCGCGGC GCCGATCACG CCAGGGTGAA ACTCTTCTGT ACTGAGGTCG AAGACGGCAA ACAGGGAGAT ACCAGAGCAG TCGTGAATGG CGATCTGGTG ATCGGTAGCT ACAGCTTCAG CCACAATGGC AAGAAGTTGG CATTTAGCCA TAATGGGCTG GACCACTTCT CAGAGATGTT CATTGCCGAT GCCAATAGCA AGCGCGCCAA GTTTAAGCGC ATCACCAATA TCAATCCTCA GGTCGATAGC TGGATACTAC CGCAAATATC CGTCGTAAAA TGGAAGGCCC CCGATGGCAG CACAGTCGAA GGTATCTTAG ATCTTCCGGC GGGATATAAG AAAGAGGATG GCCCACTGCC ATTAATCGTG CAGATCCATG GCGGTCCTAC CTCCGCTACA CCTTATGCCC TGCAACACAG ATCCTACGGC CGCTCTACAT TTACAGCAAA TGGCTGGGCT CTGCTGTCAC CCAACTATCG TGGCTCGACC GGTTATGGCG ATAAGTTCCT CACCGAACTC GTGGGTCAGG AACATGTCAT CGAGGTCAAT GACATCATGG CCGGTGTCGA CCATCTGATC GACGAAGGTA TTGTCGATGG CGATAAGATG GCCGTCATGG GATGGAGCAA CGGCGGCTAT CTCACTAATG CTTTGATCAG TACCAATGAG CGCTTCAAGG CGGCAAGTTC CGGCGCCGGA GTGTTCGATC AACGCCTGCA GTGGATGCTG GAAGATACAC CTGGCCACGT GGTCAACTTC ATGGAAGGTC TCCCCTGGGA GAAGCCAGAT GCTTACACTC ATGGCTCTTC ACTCACCCAC GCAGATAAGA TTAAAACACC AACGCTTATC CATATAGGTG AGAATGATCA ACGCGTTCCA GTCGGACATG CTCAGGGTCT ATATCGTGCA CTCAAACATT ACCTCAATGT ACCGGTAGAG TTGATCGTTT ATCCGGGCGA AGGTCATGGA CTGAGTAAGT ACCAACACAG AAAAGCTAAG ATGGAGTGGG ACCAGAAATG GTTCAACCAC TACGTCCTCG GCAAAGCTAT CGATTAA
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Protein sequence | MGRANKLTVL AMISAGLFLG GSANALASQR THQITTDDFF DIGGMSSVQL SPDGKQAVWL ETRWDKELDK SQRDLWQVNT KNKKTTRLTF TNESESSPQW SGDGQYIYYI GKVTHEDKKA PYNGKSQVFR INRDGGDAVP VTKEVEGVSS FSLSPDGNTL YFLGSKTVKD KDEWASMRAG HSAPKYAHGE RKTNPLYKLD LQHFKQQLIL DDDKVVWNFS VSDDGSKVAR ITTSDNELVN LEGWSDIEIY NTRSKSNEVL EDTAWREQAP SPYGWLLGLD WHSDNQQLAF RIDFDGHPGK LFVSNTKTKS LTEVTRIDDV TLNSSDIHWR PNSDELCYRG ADHARVKLFC TEVEDGKQGD TRAVVNGDLV IGSYSFSHNG KKLAFSHNGL DHFSEMFIAD ANSKRAKFKR ITNINPQVDS WILPQISVVK WKAPDGSTVE GILDLPAGYK KEDGPLPLIV QIHGGPTSAT PYALQHRSYG RSTFTANGWA LLSPNYRGST GYGDKFLTEL VGQEHVIEVN DIMAGVDHLI DEGIVDGDKM AVMGWSNGGY LTNALISTNE RFKAASSGAG VFDQRLQWML EDTPGHVVNF MEGLPWEKPD AYTHGSSLTH ADKIKTPTLI HIGENDQRVP VGHAQGLYRA LKHYLNVPVE LIVYPGEGHG LSKYQHRKAK MEWDQKWFNH YVLGKAID
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