| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4202 |
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| Symbol | |
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| ID | 5611932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5159106 |
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| End bp | 5160173 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935161 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475934 |
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| Protein GI | 157377334 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAGA GAGGTATCAT GAATACAAAA ATTAAGGCGC TCGTTATTGC GGTGGCACTG
TTAACCACCA CAGGTGCCAC CGTTAACACC TTTATGCCCA ACGCCGATAG TATCAAGACT
GACAATGCTT ACGTTCATGG CGAGATCACT CAGATAAGCG CCGAAGCCTC AGGGCGGATC
ACCGAGATTT TTGTCACCGA CAATCAACTC GTTCAAGCCG GAGACCTTCT GGCCACAATC
GATCCACGGG ATTACCTTGC TCGTCGGGAT CAAGCCAAAG CGGCCCAATC CATGGCCACA
GCGTCTTTAG AGAACAACCG TAGCCGAACC GAGTTGCAGC GGGTCAAGAT CGACGAAACG
GCAGCCTACC TGGAGGTCGC CCGTGCAACC TATGAACTGG AACAAAGAGA GTTGCGACGC
TATTCAAAAC TGGTTAAAAC CGGAGCTGTC AGCAAGACGC TTCATGATGC CCAAACCAAT
AAGGCAAGGA TTGCCGACGC CAACCTGGAG GCGGCGCAGC TCAAACTTAC AGCCGCAAAA
CATCAGCTCA TCACTTTACA AACCGAGCGC TCACAAATTG TCGCACAAGA GCAGCAAACC
CGTGCAGCGC TGGAGCTGAG GGAGCTCGAA TTACAAGACA CGCAAATATT GGCTCCCATT
ACGGGTCTTG TGGGTAATCG CTCGCTACAG CTTGGTAAAT TCGTCAAAGC AGGCTCCGGA
GTGCTGGCCA TAGTGCCCAT CGATAATTTA TGGGTGCAGG CCAATTACAA GGAGACTCAG
CTGACTCATA TAAAACCCGG CCAAGAGGTA GAAGTATTAT TGGACATGTT CCCCGGCACT
GAGTTTAAAG GCAGAGTAAC CAGTACCTCC CCCTCTACCG GAGCCCAATT CAGCCTGCTT
CCACCCGATA ACGCCACCGG TAACTTCGTT AAGGTGGTTC AACGCGTGCC GGTAAAGATC
CAACTCGAGA TCCCCGGAGA ACTTCAGGGG CGTGTCGTAC CGGGACTTTC TGCAGAAGTG
ACCATAAATA CCGAAAGTGA CTCCGGCGTG CTTGAGCAGG AGGGATAA
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| Protein sequence | MFERGIMNTK IKALVIAVAL LTTTGATVNT FMPNADSIKT DNAYVHGEIT QISAEASGRI
TEIFVTDNQL VQAGDLLATI DPRDYLARRD QAKAAQSMAT ASLENNRSRT ELQRVKIDET
AAYLEVARAT YELEQRELRR YSKLVKTGAV SKTLHDAQTN KARIADANLE AAQLKLTAAK
HQLITLQTER SQIVAQEQQT RAALELRELE LQDTQILAPI TGLVGNRSLQ LGKFVKAGSG
VLAIVPIDNL WVQANYKETQ LTHIKPGQEV EVLLDMFPGT EFKGRVTSTS PSTGAQFSLL
PPDNATGNFV KVVQRVPVKI QLEIPGELQG RVVPGLSAEV TINTESDSGV LEQEG
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