Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4202 |
Symbol | |
ID | 5611932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5159106 |
End bp | 5160173 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640935161 |
Product | hypothetical protein |
Protein accession | YP_001475934 |
Protein GI | 157377334 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGAGA GAGGTATCAT GAATACAAAA ATTAAGGCGC TCGTTATTGC GGTGGCACTG TTAACCACCA CAGGTGCCAC CGTTAACACC TTTATGCCCA ACGCCGATAG TATCAAGACT GACAATGCTT ACGTTCATGG CGAGATCACT CAGATAAGCG CCGAAGCCTC AGGGCGGATC ACCGAGATTT TTGTCACCGA CAATCAACTC GTTCAAGCCG GAGACCTTCT GGCCACAATC GATCCACGGG ATTACCTTGC TCGTCGGGAT CAAGCCAAAG CGGCCCAATC CATGGCCACA GCGTCTTTAG AGAACAACCG TAGCCGAACC GAGTTGCAGC GGGTCAAGAT CGACGAAACG GCAGCCTACC TGGAGGTCGC CCGTGCAACC TATGAACTGG AACAAAGAGA GTTGCGACGC TATTCAAAAC TGGTTAAAAC CGGAGCTGTC AGCAAGACGC TTCATGATGC CCAAACCAAT AAGGCAAGGA TTGCCGACGC CAACCTGGAG GCGGCGCAGC TCAAACTTAC AGCCGCAAAA CATCAGCTCA TCACTTTACA AACCGAGCGC TCACAAATTG TCGCACAAGA GCAGCAAACC CGTGCAGCGC TGGAGCTGAG GGAGCTCGAA TTACAAGACA CGCAAATATT GGCTCCCATT ACGGGTCTTG TGGGTAATCG CTCGCTACAG CTTGGTAAAT TCGTCAAAGC AGGCTCCGGA GTGCTGGCCA TAGTGCCCAT CGATAATTTA TGGGTGCAGG CCAATTACAA GGAGACTCAG CTGACTCATA TAAAACCCGG CCAAGAGGTA GAAGTATTAT TGGACATGTT CCCCGGCACT GAGTTTAAAG GCAGAGTAAC CAGTACCTCC CCCTCTACCG GAGCCCAATT CAGCCTGCTT CCACCCGATA ACGCCACCGG TAACTTCGTT AAGGTGGTTC AACGCGTGCC GGTAAAGATC CAACTCGAGA TCCCCGGAGA ACTTCAGGGG CGTGTCGTAC CGGGACTTTC TGCAGAAGTG ACCATAAATA CCGAAAGTGA CTCCGGCGTG CTTGAGCAGG AGGGATAA
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Protein sequence | MFERGIMNTK IKALVIAVAL LTTTGATVNT FMPNADSIKT DNAYVHGEIT QISAEASGRI TEIFVTDNQL VQAGDLLATI DPRDYLARRD QAKAAQSMAT ASLENNRSRT ELQRVKIDET AAYLEVARAT YELEQRELRR YSKLVKTGAV SKTLHDAQTN KARIADANLE AAQLKLTAAK HQLITLQTER SQIVAQEQQT RAALELRELE LQDTQILAPI TGLVGNRSLQ LGKFVKAGSG VLAIVPIDNL WVQANYKETQ LTHIKPGQEV EVLLDMFPGT EFKGRVTSTS PSTGAQFSLL PPDNATGNFV KVVQRVPVKI QLEIPGELQG RVVPGLSAEV TINTESDSGV LEQEG
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