Gene Ssed_4201 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4201 
Symbol 
ID5611931 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5158296 
End bp5158901 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content47% 
IMG OID640935160 
Producthypothetical protein 
Protein accessionYP_001475933 
Protein GI157377333 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCCAT CCACGTTGAA AAAGCAACAA AAAATCATAG AGGTAGCGAC TAAGCTATTT 
TTTGAACAAG GTTACGCCGA GACCAGTTTA GATCAGATCA TCGATCTCTG TGGCGGCTCG
AAACAGACGC TCTATAGCTA CTTCGGTTGC AAGAGAGGAA TACTGATTCA GGTTATTACC
AGCTGTACCG AAGAGGTTGG TAACGTGTTT CAATTTGATC CGGAGAGTGA ATCTGACCTG
TCGGAGCAGC TGGCTCTGTT CGGTTACGAT TATCTCAGGG CATTATGCTC GCAGCCCATC
ATCGAAATGT ATCGCATCAT AGTGGGAGAA GCGCGCCGCG ATAAAGAGCT GGTTGAATTC
TTCTTATCCC GTGGTCCCCA TCGTTTCTAT GACAGACTCA GCGAATTTTT ACAGAGCCAG
GCGCAACAGG GAAAAATAGA TCTTGAGGAG CCTGAGTTGA CAAGCTCTCA GCTTATGGGC
TTGCTAAGAG GAAACTATTT TCAGGATGTG GTGCTGGGCG TGGATATCCC GTCCGATGAA
GAGATGATGC AATACTCAGT GCAGGCGGTA AGGTGTTTCT TACAGGGTTA TGAAACCAAG
GCTTAG
 
Protein sequence
MRPSTLKKQQ KIIEVATKLF FEQGYAETSL DQIIDLCGGS KQTLYSYFGC KRGILIQVIT 
SCTEEVGNVF QFDPESESDL SEQLALFGYD YLRALCSQPI IEMYRIIVGE ARRDKELVEF
FLSRGPHRFY DRLSEFLQSQ AQQGKIDLEE PELTSSQLMG LLRGNYFQDV VLGVDIPSDE
EMMQYSVQAV RCFLQGYETK A