Gene Ssed_4183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4183 
Symbol 
ID5612264 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5142057 
End bp5142848 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content48% 
IMG OID640935142 
ProductTetR family transcriptional regulator 
Protein accessionYP_001475915 
Protein GI157377315 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.302127 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTGTC CTACTGAAGC ATTGCCCATG ATACGCTGTA ACCAAATACT CGATGCCGCA 
GAACAGCTGA TCGAGTCACA AGGTATAGTG TCATTTAAGT TCTCGCAGTT GGCTAAAGAG
GTAGGCTGCT CTACGGGAAC CCTGTATAAG TTCTTCGAGC GCAAAGAGGA TGTCTTAGTC
TGCCTGTTTC TCAGGAGTGC GACCTCTAAC CACCTTCCCA TTTTTATCGA TAAGCACCCT
GAGCTGACGG CTCAGGAGAA AGTACTGCTG CCAATATTGT TTACGTTTGA AACCATCAAG
CGCAGTAAGA GTTTCTTTAC CTTGCGATCG GTGTCGGTCA ATACTATGGT TTGGCAGCTG
GCCAGTGATG AGAAGGTGGA ACGTTTTAAG AAGCGAATCA ATGCCTTCTG GGAGTGGTTT
ACCGCCTCTC TTCATGAAGC CGTGGATAAG GGGGAGTTAG ATGCGACGCC GCTGCAGATT
AAAGAGTTGG TGCAGGGAAT AGCCTTTTAT CTGACAGGCT CACTGACCCA GTTTGAGAGT
GAACTCATTG CACCAGAATA TCTGTCGAAT CGTCGTGAGA CCTGCTACCG CCATCTTTCA
AAGTTGATGG CGCAATATCG ATGGAAAAAG CCGCTAAACC AGGCACTGTT TGATTCCCTC
GAGGCGCAAA CGACGAAGTT TTTCGATAAA CACTATCGTG AACATATGAC ATGTGCTGCA
TGTAGCGCAT CGGCCTGTTC TCAAGAAAGA GACGAGAGCC ACTGCCCACC ATTACAGCGG
TTAGCGGGTT AA
 
Protein sequence
MKCPTEALPM IRCNQILDAA EQLIESQGIV SFKFSQLAKE VGCSTGTLYK FFERKEDVLV 
CLFLRSATSN HLPIFIDKHP ELTAQEKVLL PILFTFETIK RSKSFFTLRS VSVNTMVWQL
ASDEKVERFK KRINAFWEWF TASLHEAVDK GELDATPLQI KELVQGIAFY LTGSLTQFES
ELIAPEYLSN RRETCYRHLS KLMAQYRWKK PLNQALFDSL EAQTTKFFDK HYREHMTCAA
CSASACSQER DESHCPPLQR LAG