Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4183 |
Symbol | |
ID | 5612264 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5142057 |
End bp | 5142848 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640935142 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001475915 |
Protein GI | 157377315 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.302127 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTGTC CTACTGAAGC ATTGCCCATG ATACGCTGTA ACCAAATACT CGATGCCGCA GAACAGCTGA TCGAGTCACA AGGTATAGTG TCATTTAAGT TCTCGCAGTT GGCTAAAGAG GTAGGCTGCT CTACGGGAAC CCTGTATAAG TTCTTCGAGC GCAAAGAGGA TGTCTTAGTC TGCCTGTTTC TCAGGAGTGC GACCTCTAAC CACCTTCCCA TTTTTATCGA TAAGCACCCT GAGCTGACGG CTCAGGAGAA AGTACTGCTG CCAATATTGT TTACGTTTGA AACCATCAAG CGCAGTAAGA GTTTCTTTAC CTTGCGATCG GTGTCGGTCA ATACTATGGT TTGGCAGCTG GCCAGTGATG AGAAGGTGGA ACGTTTTAAG AAGCGAATCA ATGCCTTCTG GGAGTGGTTT ACCGCCTCTC TTCATGAAGC CGTGGATAAG GGGGAGTTAG ATGCGACGCC GCTGCAGATT AAAGAGTTGG TGCAGGGAAT AGCCTTTTAT CTGACAGGCT CACTGACCCA GTTTGAGAGT GAACTCATTG CACCAGAATA TCTGTCGAAT CGTCGTGAGA CCTGCTACCG CCATCTTTCA AAGTTGATGG CGCAATATCG ATGGAAAAAG CCGCTAAACC AGGCACTGTT TGATTCCCTC GAGGCGCAAA CGACGAAGTT TTTCGATAAA CACTATCGTG AACATATGAC ATGTGCTGCA TGTAGCGCAT CGGCCTGTTC TCAAGAAAGA GACGAGAGCC ACTGCCCACC ATTACAGCGG TTAGCGGGTT AA
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Protein sequence | MKCPTEALPM IRCNQILDAA EQLIESQGIV SFKFSQLAKE VGCSTGTLYK FFERKEDVLV CLFLRSATSN HLPIFIDKHP ELTAQEKVLL PILFTFETIK RSKSFFTLRS VSVNTMVWQL ASDEKVERFK KRINAFWEWF TASLHEAVDK GELDATPLQI KELVQGIAFY LTGSLTQFES ELIAPEYLSN RRETCYRHLS KLMAQYRWKK PLNQALFDSL EAQTTKFFDK HYREHMTCAA CSASACSQER DESHCPPLQR LAG
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