| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4180 |
|---|
| Symbol | |
|---|
| ID | 5612326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5139404 |
|---|
| End bp | 5140144 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640935139 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475912 |
|---|
| Protein GI | 157377312 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.745034 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA AACTACTAGT CGCTTCGGCA ATTCTTGTGA CAGGTTGCGC AACCGCAGCC
GATAAGCCAG CCGATCAGCC TTGGCACAAT GCAAAGCCTA CACTCTCTAC GATTAACGCA
CCAACTAAGG TTATGCCTAT GGTGTGTAAG CAAGAGCAGG CCATGGCCTA CCTGAAAGAA
CTTCAGTCGG GTGAAAAAGA TATTTACAAC ATCAAGTCAA ACGATCACGG CGGTAAAGGT
GCCAATGACT CTGGCTGGTT AACATGGCGC GTGGATGACC CAAGCAACCT TATCCCTTGT
CCGGAAGGTG GCGCATCTGC GACTGAAGTC GGCATGTGCT GGAAAGAGCT AAACGATGAA
CCAACGGTTA TCGGTTTAGT ACGTGTTGCA CCAGGTACTG CGGCACCTCA CTACCACCGC
GAAATGGAAT GTTACTACGG CCTAAGTGGT CAAGGCCTGA CTTGGGCACA AGAGCGTATG
CAACCATTTG GTGCCGGCGA CTACATCGAG ATCCCAAGTA AGGCGATGCA CTACACGCCA
AACACCTATG ATGATCAGGA TCTGATCTAC ATGTACTGGT TCCCACTCGA TGGCAAGTTC
TCAACCTTCA AGTACCAGTG GCCACAAGAT GTAGGTCCAG GTGAGCAACT GATGTTTGAT
TTCATTCCAT ACACTAACTC TAAGCTCGTG CGTTCAGGTA ATGGTGGTTA CGGTTGGGAC
GTGGTCCAAA AAGCTAAGTA A
|
|---|
| Protein sequence | MMKKLLVASA ILVTGCATAA DKPADQPWHN AKPTLSTINA PTKVMPMVCK QEQAMAYLKE
LQSGEKDIYN IKSNDHGGKG ANDSGWLTWR VDDPSNLIPC PEGGASATEV GMCWKELNDE
PTVIGLVRVA PGTAAPHYHR EMECYYGLSG QGLTWAQERM QPFGAGDYIE IPSKAMHYTP
NTYDDQDLIY MYWFPLDGKF STFKYQWPQD VGPGEQLMFD FIPYTNSKLV RSGNGGYGWD
VVQKAK
|
|---|
| |