| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4176 |
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| Symbol | |
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| ID | 5612294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5135224 |
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| End bp | 5136315 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935135 |
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| Product | branched-chain amino acid aminotransferase |
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| Protein accession | YP_001475908 |
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| Protein GI | 157377308 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01123] branched-chain amino acid aminotransferase, group II |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.575055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAATAA ATTATAATTT AAAACCTGCG TTAGAGCGCC GTACTGAGCA GTTCGAGCCT
GAAACAGATG TGGGCTTCGG TAACCTCAGA ACCGATCATA TGTTTTTAAT GGATTATCGC
GACGGCCAGT GGTGCGATCC CAGAGTTGTT CCCTATGGGC CATTTGAAGT TGCACCCGGT
GCAATTGCCC TGCATTACGG TCAGTCTGTG TTTGAAGGTG CGAAAGCCTT TATGCATGAA
GACGGCGAAA TTTACACCTT CCGTTTAGAC AAAAATGCGG AGCGACTCAA TCGTTCTGCC
GATATTCTAT GTATTCCTGG CCTGTCTGAA GCGATGCAAC TGGAAGGCAT TAACGCCTTG
ATCGATGTCG ACAGACTCTG GTTCCCGATG CAGGAGGGGG CTTGTCTCTA TATTCGTCCC
TTTATCTTTG CCACCGAAGA TAGGTTGTCT GTCAGCCCGA GCGAGCAATA TACCTTCTGT
GTGATGCTGA GCCCGAGCGG CCCCTATTAC TCTGATGGAT TCGATAAGGC GATTCGTCTG
CTTATCAGTG AGCGCTTCCA CCGTGCGGTA TCGGGTGGTA CCGGAGCCTC TAAGGCCGCG
GGTAACTACG CCGCGTCGTT GAAAGCCGGT AAGGCTGCTG CCGAGTATGG TGCCGCACAG
GTGCTTTACC TCGATGCGAG CAACAAGCAG ATCGAAGAGG TCGGCGCCAT GAATCACTTT
CATATCCTCA AAGATGGCAC TGTGATCATT CCAAGTTTTA CCGATACGAT CCTTAAATCG
ATCACCTCGC AATCTATCTT GGATCTGGGT GAGCTGCTCG GCTGTGAAGT GCGCCAAGAG
ACGGTGATGT TAGATAAGTT TATCGCGGAC ATCGAATCCG GCGAGATCAT CGAGGCGGGT
GGTTTTGGTA CCGCTGCCGT CGTGTCACCT GTTGGCTCGT ACATCTTCGA AGATAACCGG
GTTGTTACGG TTGGAGATGG CCATGTTGGT GACAATACCC GCCGTCTGTA TCAGGTGCTC
ACAGATATTC AGAAGGGGAA AATTGAAGGC CCTGAAGGAT GGGTACAACA TGTAACACGA
GTCGCCCCAT AA
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| Protein sequence | MQINYNLKPA LERRTEQFEP ETDVGFGNLR TDHMFLMDYR DGQWCDPRVV PYGPFEVAPG
AIALHYGQSV FEGAKAFMHE DGEIYTFRLD KNAERLNRSA DILCIPGLSE AMQLEGINAL
IDVDRLWFPM QEGACLYIRP FIFATEDRLS VSPSEQYTFC VMLSPSGPYY SDGFDKAIRL
LISERFHRAV SGGTGASKAA GNYAASLKAG KAAAEYGAAQ VLYLDASNKQ IEEVGAMNHF
HILKDGTVII PSFTDTILKS ITSQSILDLG ELLGCEVRQE TVMLDKFIAD IESGEIIEAG
GFGTAAVVSP VGSYIFEDNR VVTVGDGHVG DNTRRLYQVL TDIQKGKIEG PEGWVQHVTR
VAP
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