| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4175 |
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| Symbol | |
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| ID | 5612293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5134347 |
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| End bp | 5135072 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935134 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_001475907 |
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| Protein GI | 157377307 |
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| COG category | [K] Transcription |
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| COG ID | [COG1802] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACACG ATTTGATCAT GGAACTTAAT ACATCTGTGG CGACAGACAC CAGAGCAGAG
TCAATAACTT CAGTGGTAAA TATCACCCTG GCCGATCGGG TGTTAGGCGA AATCCAGACC
AGTATTATTA AGGGTGAACT CCCCACCGGC AGTAAGATTA ACGAGCAGGC ATTAGCCCGG
AAGTATGGCA TCAGCCGAGG GCCCACTCGT GAAGCACTGC AAACCCTCGA GCAGCGTCGC
CTAATCGTGC GAGTGCCTCA TGTCGGTGCT CGAGTCGCAG AGCTCACGGT AGATGAGCTA
AACGATCTGT ATCAGCTGCG CAGCGTTTTA GAATGTATGG CCTGTGAGCT GGCGGCGCAG
AACATCACTC AGGTTCAACT GGAAAAATTA CAGCAGGTAT TAACGGAGCA GGAAACGGCA
CTATCTGATG GTGACAGCTA CTTTCAAGAG GAGGGGGATG TCGATTTTCA CTATCAGATA
ATACTGGCGA GCGGCAATAA ACACCTGCAG GAGACCTTAG TCGGTGGCCT ATATCATCTG
CTGCGTATGT ATCGTTACCA ATGCACTAAC AAGAGTCGTC CCGTTAAGGC GATTGCCGAT
CACAGACGCA TTGTCGAAGC TATTGCCAGC CGCGACAGTG AACTGGCAGG CTTATTGATG
CGCAGGCACA TAGAGCAGGG ACGAATTAAT ACTGAAAAAC GTTTGAAAGA GCTCCAAACA
GAGTAA
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| Protein sequence | MKHDLIMELN TSVATDTRAE SITSVVNITL ADRVLGEIQT SIIKGELPTG SKINEQALAR
KYGISRGPTR EALQTLEQRR LIVRVPHVGA RVAELTVDEL NDLYQLRSVL ECMACELAAQ
NITQVQLEKL QQVLTEQETA LSDGDSYFQE EGDVDFHYQI ILASGNKHLQ ETLVGGLYHL
LRMYRYQCTN KSRPVKAIAD HRRIVEAIAS RDSELAGLLM RRHIEQGRIN TEKRLKELQT
E
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