| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4169 |
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| Symbol | |
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| ID | 5612327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5126930 |
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| End bp | 5127733 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935128 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475901 |
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| Protein GI | 157377301 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATAC TGGCTATCTT CTTAGTATTA TCAGGGTTAA CGGGACTGAT TGCCTCTCTG
GTCCCGACTC ATCAAATGTG CAATATCCCC GATCACCAAC ATAAAGGCTG GCTGCTTCTG
CTTAACCTGA TTTTTATGTT TATTTTGGGT TACCTGGGTT ATATCTGGAT GCTGATTAAT
CGTGAGATTG GCACTCTGGA GATGATCGTA GCCACCATAT TTTGTGGTGG AGGGATGTTT
GTTTTTGTCA TCACGAAAAT GAGTCGGGAA ACCATATTTA CACTCCAGAA CACGATTCAA
GCCAAACATT ATCAGGCCCA TCATGACCAA TTAACCGGGC TGCCCAACCG TAATCTCTTT
TATGAAGAGA TCGATAAACT GATCACCTTT GACGACAATA AATTTTGCTG CCTGATGATG
GATCTCAATG ACTTCAAGAT GATCAACGAT ACCTTTGGCC ATGCCGAAGG CGATCATGTG
TTGCAGATCG TGGCCCAACG TATAAGCAGA GCGCTGCCCA ACGACGCTAT AGCCGCAAGG
CTGGGTGGTG ATGAGCTATC TGTGGTTCTT CCCAACACTC AGGCTCAAGA TTCATTCATC
GTCGCCCGAG CGATTCAGGA GGAGTTGCTC AAGGATATTA CTTGTGGAAA TCACTCATTA
GTGATCGGTA TTAGCATCGG CATTGCCGAA TACCCGCAGG ATGGCGATAC TCGAAAGAGC
ATAATGAAAA GTGCCGATAT CGCTATGTAT CATGCCAAGA AGCACGACAA TCATTTACAG
ATATTTGCGG CACATATGGG CTGA
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| Protein sequence | MNILAIFLVL SGLTGLIASL VPTHQMCNIP DHQHKGWLLL LNLIFMFILG YLGYIWMLIN
REIGTLEMIV ATIFCGGGMF VFVITKMSRE TIFTLQNTIQ AKHYQAHHDQ LTGLPNRNLF
YEEIDKLITF DDNKFCCLMM DLNDFKMIND TFGHAEGDHV LQIVAQRISR ALPNDAIAAR
LGGDELSVVL PNTQAQDSFI VARAIQEELL KDITCGNHSL VIGISIGIAE YPQDGDTRKS
IMKSADIAMY HAKKHDNHLQ IFAAHMG
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