| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4162 |
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| Symbol | |
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| ID | 5612415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5117681 |
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| End bp | 5119531 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640935121 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_001475894 |
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| Protein GI | 157377294 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAT TACGTTCAGC TACCAGTACC GAAGGTCGTA ACATGGCCGG AGCCCGCGCT
TTATGGCGTG CTACCGGAGT GAAAGAGAAT GATTTCGGTA AGCCGATTAT TGCGATTGCT
AACTCTTTTA CTCAGTTTGT ACCGGGTCAT GTTCACCTTA AAGATATGGG CTCATTGGTG
GCTGGCGCCA TCGAAGAAGC GGGCGGTATC GCCAAAGAGT TTAATACTAT CGCTGTCGAT
GATGGTATCG CCATGGGCCA TGGCGGCATG CTTTATAGTT TGCCTTCACG GGAGCTTATC
TCCGACAGTG TCGAATATAT GGTGAATGCT CACTGCGCCG ATGCCTTAGT CTGCATCTCA
AACTGTGACA AGATCACCCC AGGCATGATG ATGGCGGCGC TACGACTGAA CATTCCGGTG
ATCTTCGTCT CCGGTGGTCC GATGGAAGCG GGTAAGACTA AATTATCAGA CAAGATCATT
AAACTCGACT TAGTCGATGC CATGGTCGCC GGCGCCGATG ACCGGGTCTC GGATGAAGAC
AGTGAACAGA TCGAGCGTAG CGCCTGCCCG ACCTGTGGCT CATGCTCCGG CATGTTTACC
GCCAACTCGA TGAACTGCTT AACCGAAGCC TTAGGATTGT CACTTCCCGG TAACGGCTCT
ATGTTGGCGA CTCACGCCGA CCGTCGCGAG CTGTTCTTAG AAGCGGGTCG TCGCATCATG
GATCTGACTA CCCGTTACTA TAAGCACGAT GATGAGTCTG CACTGCCACG TAATATCGCT
AACTTTAACG CATTCGAGAA TGCCATGACG CTCGATATTG CCATGGGTGG CTCGAGTAAT
ACCGTATTAC ACCTCTTAGC GGCTGCGCAG GAGGGGGAAG TCGACTTTAC CATGGAAGAT
ATCGACAGAC TTTCACGTCT GGTGCCGCAT CTGTGTAAAG TGGCGCCTTC GACGCCTGAA
TACCATATGG AAGATGTGCA TCGCGCCGGT GGCGTGATGG GGATTTTAGG CGAACTCGAC
AGAGCCGGCC TGATCCATAA CGATGCTTAT CATGTGGCGG GCGCGAGCTT GAAAGAGGTG
CTGGCTAAGT GGGATATCGC TCAGAGCAGT GATGAAGCCG TGCACAGGTT CTTCTCGGCA
GGTCCTGCCG GGATCCCGAC AACCAAGGCC TTCAGTCAGG CTTGTCGTTG GGACAGTGTA
GATAACGATC GTGTGGGCGG TTGTATCCGT AAGCGCGAAT TTGCCTTTAG TCAGGAAGGC
GGCCTTGCCG TACTGTCCGG TAATATTGCC GTCGATGGCT GTATCGTTAA GACCGCGGGC
GTGGATGAAG ACAATCATAC CTTTATCGGT TCGGCTCGTG TCTATGAGAG TCAGGACGAT
GCGGTTGCCG GGATCTTAGG TGGTGAAGTC GTTGCCGGTG ATGTGGTGGT TATTCGCTAC
GAAGGGCCTA AAGGTGGCCC GGGTATGCAG GAGATGCTCT ACCCAACGAG TTATCTTAAG
TCTCGCGGAC TCGGTAAGGC GTGCGCCTTA ATCACTGATG GTCGTTTCTC CGGTGGTACT
TCCGGTTTGT CTATCGGTCA CGTTTCGCCG GAAGCTGCGG CGGGTGGCAC CATAGGTTTA
GTTGAAACCG GTGACAGAAT CGAGATCGAT ATTCCGGCCC GTTCAATCAA GTTAGCCATT
AGTGATATTG AGTTAGCAGC ACGTCGCAGC GCGATGGAAG CACGCGGTAA GCAAGCGTGG
AAGCCAGTGG GTCGCGTAAG AGAAGTGTCA TTAGCCCTTA AAGCCTATGC GCTACTCGCT
ACCAGTGCCG ATAAGGGCGC GGTTCGTGAC ACCAGTAAGC TGGAGGATTG A
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| Protein sequence | MPKLRSATST EGRNMAGARA LWRATGVKEN DFGKPIIAIA NSFTQFVPGH VHLKDMGSLV
AGAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI SDSVEYMVNA HCADALVCIS
NCDKITPGMM MAALRLNIPV IFVSGGPMEA GKTKLSDKII KLDLVDAMVA GADDRVSDED
SEQIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHADRRE LFLEAGRRIM
DLTTRYYKHD DESALPRNIA NFNAFENAMT LDIAMGGSSN TVLHLLAAAQ EGEVDFTMED
IDRLSRLVPH LCKVAPSTPE YHMEDVHRAG GVMGILGELD RAGLIHNDAY HVAGASLKEV
LAKWDIAQSS DEAVHRFFSA GPAGIPTTKA FSQACRWDSV DNDRVGGCIR KREFAFSQEG
GLAVLSGNIA VDGCIVKTAG VDEDNHTFIG SARVYESQDD AVAGILGGEV VAGDVVVIRY
EGPKGGPGMQ EMLYPTSYLK SRGLGKACAL ITDGRFSGGT SGLSIGHVSP EAAAGGTIGL
VETGDRIEID IPARSIKLAI SDIELAARRS AMEARGKQAW KPVGRVREVS LALKAYALLA
TSADKGAVRD TSKLED
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