| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4161 |
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| Symbol | |
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| ID | 5612414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5116129 |
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| End bp | 5117679 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640935120 |
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| Product | threonine dehydratase |
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| Protein accession | YP_001475893 |
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| Protein GI | 157377293 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGCTC TAGCCTCCAA AGAGAAATTA GATTTAGCCC ACTATTATCT GCAGAAGATA
TTGCTCTCTT CTGTCTATGA TGTGGCCAAG GTGACGCCGC TATCCAGCCT GAATAAGCTC
TCGGGCCGAC TCGGGTGTCA GGTGTTTCTT AAGCGTGAAG ATATGCAGCC GGTTCACTCC
TTTAAGTTAC GTGGTGCCTA TAACAAGATA TCTGAACTCA CGCCGCCGGA GTGTCAACGC
GGGGTGGTAT GTGCCTCGGC GGGAAACCAT GCACAAGGTG TGGCTATGTC GGCGGCGGCG
CGTGGGATCA GTGCCGTCAT CGTGATGCCG GAAACCACTC CGGAGATCAA GGTCGATGCG
GTCAGACGCC TCGGCGGCGA AGTCCTGTTG CATGGTCAAG CCTTCGATCA GGCCAATGCT
CATGCGCAGA AGCTCGCAGA GACCGAAGGG CGCGTGTATG TGGCGCCTTT CGATGATGAA
GCCGTGATTG CGGGACAGGG CACCGTCGCT CAGGAGATGC TGCAGCAGCA GCGCGATCTC
GAGATGGTCT TCGTTCCTGT CGGTGGCGGA GGCTTGATTG CCGGTATTGC CGCTTATTAC
AAGGCGGTGA TGCCTCAGGT TAAAATTATC GGCGTAGAGC CGGAAGATTC AGCCTGCTTG
AAGGCGGCAC TGGAGGCCGA TGAGCGGGTC ATCTTGCCAC AGGTCGGCCT GTTTGCAGAT
GGCGTTGCGG TTAAGCAGAT TGGTGATGAG CCGTTCAGGC TTGCCCGTGA ATATGTCGAT
GATGTGGTCA CCGTAAGCTC AGATGAGATC TGCGCTGCGG TAAAAGATAT CTTCGAAGAC
ACCCGCGCCA TCGCCGAACC CGCCGGAGCA CTTTCTCTTG CTGGCTTGAA GAAGTATATG
GGTGATGAAG GGAAGGGTGA GAAGGTTGCG GCTATCCTCA GTGGTGCTAA CGTCAACTTT
CACAGCCTGC GCTATGTATC CGAGCGCTGT GAACTCGGCG AGCAGAAAGA GGCTATCCTG
GCGGTTAAAG TACCCGAACG TCCCGGTATT TTTCTGCGAT TCTGTGAGCT GCTGAATAAG
CGAGTGATGA CCGAGTTTAA CTACCGCTTC AGTAGTCGTG ATAGGGCCGT CGTGTTTGCC
GGTATTCGTC TGTCGGGCGG GAAAGCGGAG CTCGATGAGA TCATTGCGAC TCTCGAAGGA
GATGGCTTCG AGGTGCAAGA TCTCTCCCAT GATGAGACGG CAAAACTGCA TGTCAGGTAT
ATGGTTGGTG GTCATCCACC GGAGAAGCTC GATGAGCGTC TGTTCAGTTT TGAGTTTCCC
GAGCACCCGG GGGCCCTGTT TAAGTTTTTA ACAACCCTGC AGAGCAAGTG GAATATCAGC
TTGTTCCACT ACCGTAACCA CGGCGCGGCC TATGGCAGGG TACTGGCGGG ATTTGAGGTG
CCGGAGTGTG ACAGCTTAGC CTTCCAGCAG TTTTTAACTG AGCTTGGTTT TGTCTATCAG
GAGGAGACAT CCAGCCCGGC TTATAAGCTA TTTCTGGATA ATAGAGAGTA A
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| Protein sequence | MLALASKEKL DLAHYYLQKI LLSSVYDVAK VTPLSSLNKL SGRLGCQVFL KREDMQPVHS
FKLRGAYNKI SELTPPECQR GVVCASAGNH AQGVAMSAAA RGISAVIVMP ETTPEIKVDA
VRRLGGEVLL HGQAFDQANA HAQKLAETEG RVYVAPFDDE AVIAGQGTVA QEMLQQQRDL
EMVFVPVGGG GLIAGIAAYY KAVMPQVKII GVEPEDSACL KAALEADERV ILPQVGLFAD
GVAVKQIGDE PFRLAREYVD DVVTVSSDEI CAAVKDIFED TRAIAEPAGA LSLAGLKKYM
GDEGKGEKVA AILSGANVNF HSLRYVSERC ELGEQKEAIL AVKVPERPGI FLRFCELLNK
RVMTEFNYRF SSRDRAVVFA GIRLSGGKAE LDEIIATLEG DGFEVQDLSH DETAKLHVRY
MVGGHPPEKL DERLFSFEFP EHPGALFKFL TTLQSKWNIS LFHYRNHGAA YGRVLAGFEV
PECDSLAFQQ FLTELGFVYQ EETSSPAYKL FLDNRE
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