| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4160 |
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| Symbol | |
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| ID | 5612374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5114710 |
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| End bp | 5115852 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640935119 |
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| Product | Serine--pyruvate transaminase |
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| Protein accession | YP_001475892 |
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| Protein GI | 157377292 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGTTG CACCCTATAT CGATGCGTTT AATCCCCCAC GTAGAACCCT TATGGGCCCA
GGTCCATCCG ATGTTTATCC CGAGGTGCTT GCCGCACAAT CCCGTCCAAC CATTGGGCAT
TTAGATCCCC TGTTTGTCGG CATGATGGAT GAACTTAAGG GACTGATCCA GTATGCGTTC
CAGACGACCA ATGAGATGAC GCTTGCCGTC TCAGCGCCGG GCTCTGCCGG TATGGAAACT
TGCTTCGTGA ATCTGGTCGA AGCGGGTGAG AAGGTGATTG TCTGCCGTAA TGGCGTATTC
GGTGAGCGCA TGCGCCAGAA TGTTGAGCGT GTTGGTGCCA TTGCCGTTGT CGTCGACAAT
GAGTGGGGCG AAGCGGTTAG CCCGACAGAT GTGGAAGCGG CGTTGCGGGC ACATCCCGAT
GCAAAATTTT TAGCCTTCGT TCATGCGGAA ACTTCAACAG GCGCGCTATC CGATGCAAAA
GCCTTGTGTG CACTGGCTAA GCAATATGAT TGTCTGTCGA TCGTCGATGC GGTGACATCA
CTTGGCGGCG TCGAACTGAG AGTCGATGAG TGGGGCATCG ATGCCATCTA TTCCGGTAGC
CAGAAGTGCC TCTCCTGTGT ACCGGGCTTA TCGCCGGTCT CTTTCTCTCC CGCTGCGGTT
GAGAAGCTTA AAGCCCGTAA AACGCCGGTG CAGAGTTGGT TCCTGGATCA GACTCTGGTT
ATGGAATACT GGAGTGGCAG CGCCGCTACC GGTGGCAAGC GTAGTTATCA TCATACGGCT
CCGGTAAATG CGCTCTACGC CCTGCATGAG TCACTGCGTT TATTGGCTAA TGAAGGCCTG
GAAGCCGCCT GGAAGCGTCA TGCAGATATG CACCAAGTGC TGCGTCAGGG GTTGGAAGGA
TTGGGACTCA AATTCGTGGT CGATGAGGCA TCACGTCTGC CTCAGCTCAA TGCGGTCTAT
ATTCCCGAGG GGATCGATGA CGGTGCCGTG CGTTCACAAC TGCTGGAGAG CTATAACCTG
GAGATCGGAG CAGGCTTAGG TGCGCTAGCG GGCAAGGCAT GGCGCATTGG CCTGATGGGC
TTCGGTGCCC GCCGCGAGAA TGTCGCCTTG TGCCTGAAAG CATTGGACGA TGTACTGAAT
TAG
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| Protein sequence | MLVAPYIDAF NPPRRTLMGP GPSDVYPEVL AAQSRPTIGH LDPLFVGMMD ELKGLIQYAF
QTTNEMTLAV SAPGSAGMET CFVNLVEAGE KVIVCRNGVF GERMRQNVER VGAIAVVVDN
EWGEAVSPTD VEAALRAHPD AKFLAFVHAE TSTGALSDAK ALCALAKQYD CLSIVDAVTS
LGGVELRVDE WGIDAIYSGS QKCLSCVPGL SPVSFSPAAV EKLKARKTPV QSWFLDQTLV
MEYWSGSAAT GGKRSYHHTA PVNALYALHE SLRLLANEGL EAAWKRHADM HQVLRQGLEG
LGLKFVVDEA SRLPQLNAVY IPEGIDDGAV RSQLLESYNL EIGAGLGALA GKAWRIGLMG
FGARRENVAL CLKALDDVLN
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