| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4157 |
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| Symbol | |
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| ID | 5612371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5110336 |
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| End bp | 5112339 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935116 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_001475889 |
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| Protein GI | 157377289 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATA AAACAATAAC ACTGGCCTCA GTGATCACCG CTACCATGAG TATTCCAACT
CTGGTTTTCC CTCTGACAGC CCTTGCCGAA GATGAGCCAA GGGACTGTGG AGACCGTCGA
TGTGACGACT ATATTGTCAT CACGGGTGAC TTGATGCGCG AGCCGACAAA GGTCGTCACA
GATCCCAAGA AGCCAAGGCT GCCACTCCCC TCATATGATG GTGCAGGATT TCTGAAAACC
ATTCCCGGAT TCAGTATCGG TCGAAAAGGG GGGGCCGGTG GCGATCCATC CTTAAGAGGC
ATGGGCGGCT CACGCATCAG CATCGTCGAT GATGGCCAGC ATGTGTATGG CACCTGCGGT
GGACGCATGG ATCCACCGAC GGCCTATATC TACCCGGAGG CTTATGACAG CATCACTGTG
ATCAAGGGGC CACAAACCGT AAAATATGGT CCGGTGGGCT CCGCCGGAAC TGTTTTGTTT
GAAAAAGACA GACATAGCTT TGTCGAACCC GGCGTCGAAG GGCGGGCCAG CGTCACAGGC
GGCAGTTTCG AGCGACAAGA CTATATCGTC GAACTGAAAG CCGGTGATGA GACCCACTAT
CTCGATCTGG ATGTCAATCA ATCCAGCAGC GATCACTACC AGGATGGTGA CGGAAACACG
GTGCAATCCA GCTACGACCG TAACAATTAC AATATCGCCC TGGGGTGGAC CCCGACAGAC
ACCAGTGTTA TCGAACTCGC TTATGGTAAG TCTGATGGTG AAGCCGAGTA CGCCGACAGG
GCCAATAAGG CCCGGGTGAT CAATAATGAA AATGTCACCC TGTTGACTCA GTTCGAGTTC
GACTCGGATC TTATCCGCGA AATTGAGTTT CAGGCCTACA CCAACAAGAA CGACCATATC
ATGGACCAGT TCGATCAGGG GGTGAACTCC GGAGTCAATG TTCGCCGCAA AACCTCGGGG
GGTCACTTCT GGCTGGAGCT AACACCGAGT GAGAGTTTGG AGGCAACCTT AGGGGTCGAT
TACATGCAGA GTACCCATGA GGGACGCGGT ATAAACCCTG AGTTTGATAA CGGTCTCGAT
GACCTGCTAT CTAAACCATT TAAAGATAAT ATGCGTTATG AAAACATGGG AATATTTATC
GAAGCCGACT ATGCCTTAGG AGGAGGAAAT CTACTCTCAG GGTTACGCTT CGACCATTGG
GACAGTGAAC TCTTTGTCGC GCAGACGGGT AAACGCAGTG ACGACCTGAT CAGCGGGTTT
ATTCGTTATG AATATCTCAA TGGTAATAAC CAGTATTACC TTGGTACGGG TCATGCGCAG
CGGATCCCCG ATTATTGGGA GATCATGAAG GCCAGTCCGG ATAACCTATC CACCAAGGCA
TTCGATCTCG AGCCCGAGAA GACAACCCAG CTGGACATTG GTTGGATATA CCAAGCCAAT
ATCGAAATAT CGACCTCACT CTATTATGGC AAGGTCGATG ATTACATCTT AGTTGACTCC
AATACATCGA AAACCTCCGC CTACAACATC GATGCGACCA TATGGGGCGG CGAGGTTGGC
ATAACCTACC CGTTTACGGA GCAGTGGTCA GCGCAAACGA CCCTCAGCTA TAGCCATGGA
GAAAATGACA CTCAGGATAC GCCTCTGGGA CAAGTCTCTC CTATGGAGGG ACGTGTATCT
GTCAATTATG AGGGAGAAGA GTGGACGGCG GGGCTGTTCT GGCGTGTTGT TGCGGCTCAG
GATCGAGTCT CTATCGGTCA AGGTAATATC TCAGGTCAAG ATCTGGCTGA GAGCAGTGGC
TTCGGCACAC TCGCCATCAA TGGATCATGG AAGCATGGCG ACGTGGTTTT AGTGAGTTTC
GGTATCGAAA ACCTGTTTGA TATCACCTAT GCCGAACATG TGAGTCGCTC TGGTGCCGGT
AACGATATCC CCGGTAGTGA GCCTATGTTT CAGGTCAATG AACCCGGCCG CACCGCATGG
GTGAAGCTGG ACTATACCTT TTAG
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| Protein sequence | MKHKTITLAS VITATMSIPT LVFPLTALAE DEPRDCGDRR CDDYIVITGD LMREPTKVVT
DPKKPRLPLP SYDGAGFLKT IPGFSIGRKG GAGGDPSLRG MGGSRISIVD DGQHVYGTCG
GRMDPPTAYI YPEAYDSITV IKGPQTVKYG PVGSAGTVLF EKDRHSFVEP GVEGRASVTG
GSFERQDYIV ELKAGDETHY LDLDVNQSSS DHYQDGDGNT VQSSYDRNNY NIALGWTPTD
TSVIELAYGK SDGEAEYADR ANKARVINNE NVTLLTQFEF DSDLIREIEF QAYTNKNDHI
MDQFDQGVNS GVNVRRKTSG GHFWLELTPS ESLEATLGVD YMQSTHEGRG INPEFDNGLD
DLLSKPFKDN MRYENMGIFI EADYALGGGN LLSGLRFDHW DSELFVAQTG KRSDDLISGF
IRYEYLNGNN QYYLGTGHAQ RIPDYWEIMK ASPDNLSTKA FDLEPEKTTQ LDIGWIYQAN
IEISTSLYYG KVDDYILVDS NTSKTSAYNI DATIWGGEVG ITYPFTEQWS AQTTLSYSHG
ENDTQDTPLG QVSPMEGRVS VNYEGEEWTA GLFWRVVAAQ DRVSIGQGNI SGQDLAESSG
FGTLAINGSW KHGDVVLVSF GIENLFDITY AEHVSRSGAG NDIPGSEPMF QVNEPGRTAW
VKLDYTF
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