| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4147 |
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| Symbol | |
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| ID | 5612725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5096880 |
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| End bp | 5098892 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935106 |
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| Product | ATP-dependent DNA helicase Rep |
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| Protein accession | YP_001475879 |
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| Protein GI | 157377279 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0515139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTAA ACCCCGGACA AAATGATGCG GTGCACTATG TTACCGGCCC TTGCTTAGTG
CTGGCTGGTG CTGGCAGTGG TAAAACCAGG GTGATCATTA ATAAGATCGC CTATTTAGTG
CAAAAGTGTG GTTATCAGGC CCGGACGATA GCGGCGGTGA CTTTTACCAA TAAAGCGGCA
CGAGAGATGA AAGAGCGTGT CGCTCAGTCT ATGGGGCGTA AAGAGGCCCG AGGTTTATGG
ATATCCACAT TCCATACACT TGGTTTGGAG ATCATCAAAC GTGAACATAA GGTTGTTGGC
TTAAAACCTG GGTTTTCTCT ATTCGATGAT CAAGACTCTC TTGCGCTGCT AAAAGAGCTC
ACCGAAGATG AGTTCGATGG TGATAAAGAC CTGCTCAAGA TGCTGATGAC GGCGATCTCT
AACTGGAAAG GGGATCTGGT TGTTCCCGAT CAGGCACTGA AGATTGCCAA AGATGAGCAA
TCACAGCTTT TTGCCGGCCT ATACCAACGT TATGCTAAAC ATATGAAGGC GTATAACGCG
CTGGATTTTG ATGATCTTAT TCTGCTACCC ACCTTATTGT TAAGACACAA TCAAGAGGTG
AGGGAACGCT GGCAGAAGCG TATTCAATAC ATGCTTGTGG ATGAGTATCA AGATACCAAT
ACCAGTCAGT ATGAACTCGT TAAGTTGTTA GTTGGAACGC GTGCCAGATT TACCGTGGTA
GGAGATGATG ATCAATCTAT CTACTCCTGG CGTGGCGCTA AGCCGCAAAA CCTGGTCTTG
TTGGGTACAG ACTTCCCCAA GCTTAAGTTG ATAAAACTCG AGCAAAACTA TCGCTCGAGC
CAGTGTATTT TAAGAGCCGC CAACATACTT ATCGCTAACA ACCCCCATGT CTACGATAAG
GCGCTGTTTA GTGAGCTTGC CTACGGTGAG CCATTGAGAG TATTGATCGC AGCGAATGAG
GAGCAGGAGG CGGAGCGTGT TATCGCAGAG ATGGTCCGTC ATAAATTTGT TGGCAGGACT
CAATACGGCG ATTACGCCAT TCTCTACCGT GGAAACCATC AATCGCGTTT GCTTGAGCGA
GCATTGATGA CCAACCGGAT CCCCTACAAA CTCAGTGGCG GGACCTCATT CTTCGGCAGG
GCTGAAATTA AAGATATCAT GGCCTATCTC AGGTTGGTGG TGAATCCGGA TGATGATAAT
GCGTTTCTAC GTGTGGTTAA TCTGCCTAAG CGGGGGATTG GCCCATCGAC ACTTGAGCGT
TTAGGGAACT ATGCTAACGA GCGTCATATC TCTATGTTTG AAGCTATCTT CGAAGCCGAG
TTAAACCATC ATCTACCTCC GGCCGCGATG GCGTCCTTGT ATAAGTTTGG TCAGTTCGTT
ATCGACACAG GTGAAAAAGC GACGCGCGGT GATCCGGTGG ATGCGGTTAA GCACCTAATT
CGTAATATCA ATTACGAAGA TTACCTCTAT GAGACCAGCA CAAGTGCCAA AGCTGCTGAG
ATGCGAATGA AGAACATCTC CGAGTTATAC CGCTGGGTCA CTGAGATGCT TGAGGGTGAT
GAGTTGGATG AAGGGATGAC TTTGCCTGAA GTCGTCACGC GTTTAACGCT CAGGGATATG
ATGGAGCGTA ATAGTGAAGA TGAGAGCGGT GATCAGGTTC AGCTGATGAC GCTGCATGCC
TCTAAAGGGC TGGAGTTCCC CTACGTGTTT ATGGTCGGCA CCGAAGAGCG GATCCTGCCT
CACCAGAGCA GTATCGATGA AGACAATGTG GAAGAGGAGC GTCGCCTCGC CTACGTGGGG
ATCACCCGAG CTCAGAAAGA ACTCTGGTTT GTTCTGTGCC GTGAGCGTCG CCAGTTTGGT
GAAACTATGC GCTGTGAACC GAGCCGTTTC TTGATGGAGC TGCCGCAAGA TGACCTTGTT
TGGGAAAACC GTAAGCAACC TCAGAGCGAA CAACAGCGTC AGCAAGTTGG TAAATCTAAT
ATTGCCAACT TAAGAGATAT GTTTAAAAAG TAG
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| Protein sequence | MKLNPGQNDA VHYVTGPCLV LAGAGSGKTR VIINKIAYLV QKCGYQARTI AAVTFTNKAA
REMKERVAQS MGRKEARGLW ISTFHTLGLE IIKREHKVVG LKPGFSLFDD QDSLALLKEL
TEDEFDGDKD LLKMLMTAIS NWKGDLVVPD QALKIAKDEQ SQLFAGLYQR YAKHMKAYNA
LDFDDLILLP TLLLRHNQEV RERWQKRIQY MLVDEYQDTN TSQYELVKLL VGTRARFTVV
GDDDQSIYSW RGAKPQNLVL LGTDFPKLKL IKLEQNYRSS QCILRAANIL IANNPHVYDK
ALFSELAYGE PLRVLIAANE EQEAERVIAE MVRHKFVGRT QYGDYAILYR GNHQSRLLER
ALMTNRIPYK LSGGTSFFGR AEIKDIMAYL RLVVNPDDDN AFLRVVNLPK RGIGPSTLER
LGNYANERHI SMFEAIFEAE LNHHLPPAAM ASLYKFGQFV IDTGEKATRG DPVDAVKHLI
RNINYEDYLY ETSTSAKAAE MRMKNISELY RWVTEMLEGD ELDEGMTLPE VVTRLTLRDM
MERNSEDESG DQVQLMTLHA SKGLEFPYVF MVGTEERILP HQSSIDEDNV EEERRLAYVG
ITRAQKELWF VLCRERRQFG ETMRCEPSRF LMELPQDDLV WENRKQPQSE QQRQQVGKSN
IANLRDMFKK
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