| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4141 |
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| Symbol | |
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| ID | 5613066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5086390 |
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| End bp | 5087772 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935096 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001475873 |
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| Protein GI | 157377273 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.504346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAC ACTTGACGAC TCAAGATCTG GAAATGGTCG ATGATGTATA CGGTGCCATG
ATGACCGATG CACCGACCAG TCATAGATTG ATCATCTGGG CACTATCAGC CTTTGCGCTA
TGCTTCGTTC TCTGGGCTTA CTTCTCTAAG TTAGATCAGG TCACAACAGG CATGGGCAAA
GTGATCCCCT CCTCTCAAAT TCAGGTGATT CAGAGCCTGG ATGGCGGGAT AATGCAAGAG
CTCTACGTTG AGGAGGGTAT GCATGTCACT AAGGGCCAAG CACTGGTACG AATCGATGAT
ACCCGCTTTC GCTCCGAATT CGATCAACAG GAACAAGAAG TTTTTAGCCT TCAGGCTAAT
GTAAAACGGC TAGAAGCCGA GCTCAATAGT ATTATTATTT CCGATATGTC TTCAAATTGG
CGAGAGCAGG TCAAAATCAC CAAGACGCCT CTGTTATTTT CAGGGGAGCT AATCGAAAAA
GAACCTGAAC TGGTAAAACG TCAATCGGAA GAGTATTCCG GACGAATGGA TAGCCTGAGC
AATCAACTAG AAATTCTGGC CAGACAGATC CAACAAAAAC AGCAGGAAAC TGAAGAGCTG
GCTTCGAAGA TCAATACGCT CACCAGAAGC TTCCAATTAA TTTCAAGGGA GTTAGAACTC
ACCAAGCCTC TGGCAGAAAA AGGGATCGTT CCCGAAGTAG AGCTACTCAA ACTTGAGCGC
ACGGTTAACG ATATTCAAGG CGAGCTCTCC TCTCTTCGAC TGCTAAGGCC TAAAGTTAAA
GCCTCACAAG ATGAAGCAAT ATTGAAGCGT CGTGAGGCCG TGTTTGTCTT TGCCGCCGAA
ACACGGACTC AGCTCAATGA GATGCAAACC AAGCTATCCA GAATGAGCGA AGCTCAAGTC
GGTGCGCAAG ATAAAGTCAG TAAAGCCGAG ATAACATCAC CGGTGAATGG AACCATTAAG
AGTATTCATA TTACTACCCT TGGCGGCGTG GTGCAGCCGG GGATCGATAT ACTCGAAATT
GTTCCATCCG AAGACCAATT GCTAATTGAA ACCAAAATAG TTCCTAAAGA TATCGCTTTT
TTACACCCAG GTTTACCCGC CGTAGTTAAG GTCACAGCCT ATGACTTTAC ACGGTATGGA
GGCTTAAATG GGGTTGTAGA GCATATTAGT GCGGATACAA CACAAGATGA AGAGGGAAAC
AGCTTCTATC TTGTCAGAGT TCGAACTGAA CTATCAAGCT TAAAAAAGGA CGACGGCACT
GAAATGCCAA TTATACCAGG GATGTTAACC TCGGTTGATG TAATTACTGG GCAAAGATCC
GTTTTAGAGT ACATACTTAA TCCAATTTTA AGGGCGAAAG ATACGGCACT CAGAGAGCGC
TAG
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| Protein sequence | MSKHLTTQDL EMVDDVYGAM MTDAPTSHRL IIWALSAFAL CFVLWAYFSK LDQVTTGMGK
VIPSSQIQVI QSLDGGIMQE LYVEEGMHVT KGQALVRIDD TRFRSEFDQQ EQEVFSLQAN
VKRLEAELNS IIISDMSSNW REQVKITKTP LLFSGELIEK EPELVKRQSE EYSGRMDSLS
NQLEILARQI QQKQQETEEL ASKINTLTRS FQLISRELEL TKPLAEKGIV PEVELLKLER
TVNDIQGELS SLRLLRPKVK ASQDEAILKR REAVFVFAAE TRTQLNEMQT KLSRMSEAQV
GAQDKVSKAE ITSPVNGTIK SIHITTLGGV VQPGIDILEI VPSEDQLLIE TKIVPKDIAF
LHPGLPAVVK VTAYDFTRYG GLNGVVEHIS ADTTQDEEGN SFYLVRVRTE LSSLKKDDGT
EMPIIPGMLT SVDVITGQRS VLEYILNPIL RAKDTALRER
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