| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4140 |
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| Symbol | |
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| ID | 5613065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5084217 |
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| End bp | 5086397 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935095 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001475872 |
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| Protein GI | 157377272 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTGTTT CCACTCCTCA GAAAACTGAG CAATGGACCG TTTCTGCCTC TCAAAGAGTG
TCAGTCGATC CCCTGTTAGA CAGTTTAGTG TTATTAACCG AATATTTCGG CAGCCCTTGC
TCCAGTGAAT CCATGGCGGC AGGTCTCCCC CTGTCCGGTA GTGTACTCAC ACCAGACTTG
GTGCCTCAGG CCGCTGCTCG AGCGGGGTTG GCTGCAAAGT TAACCCGTAA AGGGTTAAAC
CAAATATCGC CAATTTTCCT GCCCTGTATC TTGCTGCTAA AAGATAAGAA AGCCTGCCTG
CTTCGTGAAT TGGATGTAAA AAAAGATAGG GCTGTCATTC AGCTGCCGGA GACTGGTGGC
GAAGAGACGC TATCGCTTGA AGATCTTGAA GCTATCTATG TCGGGTACCT GTTTATGGTT
AAGCAGCAGT ATCGTGGCGA TATGGGCTTC GATATTCATC TCCATGACAG TAATAAGCAC
TGGTTATTTC AAACAATTAA AGATTCGGCG CCTATCTACC GGGATGCATT AATCGCATCG
GTATTGGTCA ACCTTTTCGC TTTGGTTTCG CCGCTATTCA TCATGAATGT CTATGATAAG
GTCGTCCCCA ACCTGGCGTT CGAATCCCTG TGGGTATTAG CCATCGGCGC GGGCATCGCC
TATATCTTCG ATCTAATCAT GCGGCAACTT CGCGCCTATC TCATCGATGT TGCGGGTAAG
AAGGTCGATA TCATCGTCTC TTCCAAGCTG TTTGCCAAAG CAATAGGCAT TCCGCTGGAG
AATCGCTCAC CCAGTGTCGG AGGCATGGCC AGGCAGCTAG GTGAGTTTGA CAGTATTCGG
GATATTCTGA CTTCGGCAAC AATTACCACA TTGGTGGACT TACCATTCGC CATCTTCTTC
ATGATGATTA TCTACTTAGT AGCGGGCGAC TTAGCCTTAG TACCTCTGTT GGGAGGGGTA
ATTATTATTA CCTATACCTT GATCATGCAG CCAAAGTTAA AGGCGGCTAT TGAGGAGAGC
AACAAGTTTT CCAGCCTGAA ACATGGCCAT CTTATCGAAT CGCTCGCCTC ATTAGAGTCG
ATAAAATCCA GTGGCGCCGA GGGGTTAGTG CAGAAAAGCT GGCAACAGAT GATTGGCCAT
ACCGCCAACT GGCAATTGAA ATCGAAGAAA ATTTCAACCT CAGTAACCAA CCTCGCTAAC
TTTACGGTAC AGCTTTCTGT CGTGTCAGTG GTGATCCTGG GGGTATATCG CGTGGCCGAT
AACGAGATCT CTATGGGTGG CATTATTGCG GCCGTGATCT TATCCAGTCG GGCAATCTCT
CCCATGGCGC AGCTGGCGGG ACTCATGACC CGCGGTAATC ACACCGCAAG CGCCCTACGG
CAACTCAATG AGATCATGAC CCAAGAGGAT GAATTTGAGA ATAAGGGTCA CCTGGTTAGC
CGACAGCGCC TCCAGGGGCA GATGAGTGCC GATCATATTA GTTTCTCCTA TCCCGGTTCG
GAAAGACCGG TCTTGCACCC TATGTCTATT AACATTCAGC CAGGCGAGAG AGTCGCTATC
ATAGGCCGGA ATGGTTCAGG TAAGAGTACC CTGGCGAAAA TGCTGGTCGG ACTCTATCAA
CCAAGCAAGG GAAGCCTGAG GTATGACGGA CTGGACTCCG CTCAGATCCA CCCTACAGAC
CTGAGACGAA ACTTTGGTTA TCTCCCTCAA GATATCACTT TGTTCCATGG CTCTATCAGG
GACAACATTC TGTTTGGCAC CCGACAGGTA TCCGAACACC AACTGATCCG GGCGGTGCAA
CTGTCTGGTA TCAGCCAGTT TACAGATCTG GAAACAGAAG GATTAGATCA ACAGGTAGGT
GAAGGTGGCC GCGCACTCTC CAGGGGGCAG AGGCAAACCG TTGCCCTGGC TAGGGCGACG
CTGAACGACC CGCCGGTACT GCTTATGGAC GAACCGACGG CGAGCTTAGA TGCAAGAGCC
GAGAAACAAT TTATAAAAGC CATGGAAAAC GTCACGAGAG ACAGAACCTT GCTGCTTATC
ACCCATAAGA TGCATCTGCT AAAGCTGGTC GACCGTATTA TCGTGCTCGA CAGAGGTCAT
GTAGTTGCCG ATGGGCCTAA AAATGAGGTG CTGGAAAAAC TGAGCAAAGG TTTACTCGCC
GGAGGTCAGA GAAATGAGTA A
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| Protein sequence | MSVSTPQKTE QWTVSASQRV SVDPLLDSLV LLTEYFGSPC SSESMAAGLP LSGSVLTPDL
VPQAAARAGL AAKLTRKGLN QISPIFLPCI LLLKDKKACL LRELDVKKDR AVIQLPETGG
EETLSLEDLE AIYVGYLFMV KQQYRGDMGF DIHLHDSNKH WLFQTIKDSA PIYRDALIAS
VLVNLFALVS PLFIMNVYDK VVPNLAFESL WVLAIGAGIA YIFDLIMRQL RAYLIDVAGK
KVDIIVSSKL FAKAIGIPLE NRSPSVGGMA RQLGEFDSIR DILTSATITT LVDLPFAIFF
MMIIYLVAGD LALVPLLGGV IIITYTLIMQ PKLKAAIEES NKFSSLKHGH LIESLASLES
IKSSGAEGLV QKSWQQMIGH TANWQLKSKK ISTSVTNLAN FTVQLSVVSV VILGVYRVAD
NEISMGGIIA AVILSSRAIS PMAQLAGLMT RGNHTASALR QLNEIMTQED EFENKGHLVS
RQRLQGQMSA DHISFSYPGS ERPVLHPMSI NIQPGERVAI IGRNGSGKST LAKMLVGLYQ
PSKGSLRYDG LDSAQIHPTD LRRNFGYLPQ DITLFHGSIR DNILFGTRQV SEHQLIRAVQ
LSGISQFTDL ETEGLDQQVG EGGRALSRGQ RQTVALARAT LNDPPVLLMD EPTASLDARA
EKQFIKAMEN VTRDRTLLLI THKMHLLKLV DRIIVLDRGH VVADGPKNEV LEKLSKGLLA
GGQRNE
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