| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4129 |
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| Symbol | dapF |
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| ID | 5610844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5046356 |
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| End bp | 5047198 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935084 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001475861 |
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| Protein GI | 157377261 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.583012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGATCCATT TTACTAAGAT GCACGGCTTA GGTAATGATT TTATGGTGGT CGATGGAGTA
ACACAGAATG TGTTCTTCTC ACCTGAGCAG ATCAAGCGCC TTGCCGATCG AAATTTTGGT
ATCGGTTTCG ATCAGTTGCT ACTGGTAGAA CCCCCTTATG ATCCGGATCT GGATTTTCAC
TATCGCATAT TTAATGCCGA TGGTGGCGAG GTCGAACAGT GTGGCAATGG TGCCCGTTGT
TTTGCCCGTT TCGTTCGTAA TAAGGGGCTG ACTAATAAAC AGAAAATCAG AGTCAGCACT
TCAAATGGCA AGATCACACT AAGGCTCGAA AGAGACGGTA ATGTGACGGT TAATATGGGC
ATTCCGGTGC TTGAACCAGG GAGAATTCCA TTCAATGCTA AGAAAATGGA AAAGACATAC
CTGCTTCAGG CGACGAATCC TGATTCAACT ATGCAGACCT TCCTGTTTGG TGCCGTTTCC
ATGGGCAACC CTCACTGTGT ATTGGATGTA GAAGACATTG AGGCTGCAGA TGTTGAAGGT
ATTGGCGCGC TGCTTACCCG CCATGAACGT TTTCCTAAAG GGGTCAATGT GGGTTTTATG
CAGATCATCA ACTCAGGACA TATCAAGTTG AGAGTTTATG AACGAGGAGC TGCAGAGACC
TTAGCTTGCG GAACGGGTGC CTGCGCCGCT GCAGTTGTGG GGCAGCTACA AGGAAAATTA
GACAATTGTG TGCGTGTCGA TCTTCCTGGC GGTACCCTGA CGATTAACTG GGAAGGGGAA
GGTAAGCCGC TGTGGATGAC CGGGCCCGCC GAACACGTAT ATGATGGACA GATACAACAA
TGA
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| Protein sequence | MIHFTKMHGL GNDFMVVDGV TQNVFFSPEQ IKRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGGE VEQCGNGARC FARFVRNKGL TNKQKIRVST SNGKITLRLE RDGNVTVNMG
IPVLEPGRIP FNAKKMEKTY LLQATNPDST MQTFLFGAVS MGNPHCVLDV EDIEAADVEG
IGALLTRHER FPKGVNVGFM QIINSGHIKL RVYERGAAET LACGTGACAA AVVGQLQGKL
DNCVRVDLPG GTLTINWEGE GKPLWMTGPA EHVYDGQIQQ
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