| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4121 |
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| Symbol | |
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| ID | 5611435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5040325 |
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| End bp | 5040954 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935076 |
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| Product | peptidylprolyl isomerase, FKBP-type |
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| Protein accession | YP_001475853 |
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| Protein GI | 157377253 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0992067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0728177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACA CTAAACCAGT ATCGCTTGCG AATGATGAGC AGAAAGTCAG TTATGGGTTG
GGGTGGCAGT TTGGCCGCCA CCTACAAACT CATAACTTTG ACGGATTGGA GATGGAAACC
GTTTTTGCCG GAATGTTGGA TTGCTTCCAT GACAGAGCGG CTCCCATCAC AGATCAGCAA
GTGGAATCGG CATTTAAAAA TATCGCCGCT CTGGCAGCGG CCATTCGTCA ACGCGAAGCT
GATGAAACAG CGGGCCGAAG TCAGGCGTTT ATGTCTGAAA ACGCCCTTAA GCCAGGTGTC
GTTATCACAG ACTCCGGGCT GCAATACAAG GTCATAGAGA TGGGTGAGGG GCGAACTGCC
GGTCAGGTCG ATAATGTCAT CGTTCATTAC CATGGCATGT TGATCAACGG TGAAGTGTTC
GACAGCTCCG TCGAGAGAGG GGAGCCGGTA GAGTTTCCGG TGCAGAGCGT GATCCCCGGT
TGGACTGAGG TGTTACAGAT GATGCCGTCC GGTTCTAAGT GGCGAGTATA TGTCCCGTCA
GAGCTGGCCT ATGGCCAAGT GGGTAAGGCT CCGAAGATCC CCGGGAATGC CGCCTTGATT
TTTGACCTTG AACTGATTGA AGTCGTTTGA
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| Protein sequence | MTDTKPVSLA NDEQKVSYGL GWQFGRHLQT HNFDGLEMET VFAGMLDCFH DRAAPITDQQ
VESAFKNIAA LAAAIRQREA DETAGRSQAF MSENALKPGV VITDSGLQYK VIEMGEGRTA
GQVDNVIVHY HGMLINGEVF DSSVERGEPV EFPVQSVIPG WTEVLQMMPS GSKWRVYVPS
ELAYGQVGKA PKIPGNAALI FDLELIEVV
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