| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4120 |
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| Symbol | |
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| ID | 5611434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5038804 |
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| End bp | 5040273 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935075 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475852 |
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| Protein GI | 157377252 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1600] Uncharacterized Fe-S protein |
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| TIGRFAM ID | [TIGR02486] reductive dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00634153 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.015035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAACC AAATTGAAAA CCGGAGCTCA CAAGAGCTAC AAGATGATCT GCCGAACATG
TCGCGACGTA GTTTCTTTAA GAAAACCGTT ATAGGTGGCG GTGCGGCTAT GTTGACCGGG
GGCGTGGCAT TAGGGGCGTC GAAAGCGGCG CTGGAAGGGT CGACGAATAC GCCGGGTATC
GAAGTCGATG AACTGAACTT TAAGCCCTTC GACCAACGTG ATCTGGTATT GACTCATGCG
GTTAGCCCAA AACTATCGAA GATAGATCAC CCCGAACGTT CGGTTCAGTA TTCACGCTTG
TGGAAGAAAG ACTTTAATTT TAATGATGTG GTTCAGACAT TCGAGAACCG CGACCATTTC
GATAATAGTA AGTCAGGATA TGGTCAGGCC GACAGGGCTA TCGGCCATGC CGCCTGGTAT
CCTCTGGTTG TCGCAAAATC CCGTGCATCC GCCTTCGGTC AGCCGAATAC CCCTCTGCAT
AGCTGGGATC AAACCGACGT AGAGGCAGAG CAATATGATT GGGGGAGCGG AAAACGTGCC
GCAGATATGA TCCGTTCGAC CGGACGCCTG TTTGGCGCGG TCCGTGTCGG TATCGCTAAA
TTCGACAAGC GTTTCGTTTA CGATCCTCTT TATGACATGG AAGATGAGAG AACCCTATCC
TGGGAGAAAG ATTTCCCCTT CAAGCCCAAG TCGGTGATCG TCATTGCCAC CCCTATGGAT
TATGACAACG TAGCGACGGC TCCATCCTGG ACCTCAGAAG GGGCCACGGG TAATGGCTAT
AGCGACATGG GTAAGATGGC TTGCCAGATG GCGAAATTTA TTCGTGGCTG TGGCTACCAC
GCCGTGGGTG CGGGTAACGA TCTGGCTAAC TCGGTCGCTT ATGCCATTCT GGCGGGTATG
GGAGAAGGAG GTCGTCTCGG ATCCTGTATC ATGCCTGGCG TCGGACCCAG GGTGAGACTG
TGTAAGGTAT TCACCGATAT CGATTTTGAA GATGCTTACG ATCAGCCACG TACCTGGGGT
GTGCGTGAGT TCTGCAAGAC CTGTAAGAAG TGTGCCGACT CTTGCCCGTC TGGTGCCATC
AGTCAGGACG ATGAGCCAAC CTTTCAGCCT ACCTATGAGT TCAGTGATGA ACCGGGTTAT
ACCTGGAATA GCCACGCGGG CGTCAGTAAG TGGCATTCAG ATTCCAAACG CTGCTTCAAC
TTCTGGGTCG ATAACGATAC CTCCTGCCTG AACTGTATCG CCAGCTGTAC CTTTAATGAA
CCCGACTTCT GGCATCACTG GATGATGATG GCCGTCAATC CTATGATGCC AAAATTCCTG
CATGCCTTTA TGGCCGAAGC CCATCCGGCG TTTGGGTATG GCGGACAGGG AGCCGAGCCT
ATTCCAGGTA AGGTTGAGAA GTTCTGGGAG TCTGGTGCCG ACATGCGTAC CAACACTTCA
ATGAAAAATA ATATCGGCAC AGCCGGTTAA
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| Protein sequence | MTNQIENRSS QELQDDLPNM SRRSFFKKTV IGGGAAMLTG GVALGASKAA LEGSTNTPGI
EVDELNFKPF DQRDLVLTHA VSPKLSKIDH PERSVQYSRL WKKDFNFNDV VQTFENRDHF
DNSKSGYGQA DRAIGHAAWY PLVVAKSRAS AFGQPNTPLH SWDQTDVEAE QYDWGSGKRA
ADMIRSTGRL FGAVRVGIAK FDKRFVYDPL YDMEDERTLS WEKDFPFKPK SVIVIATPMD
YDNVATAPSW TSEGATGNGY SDMGKMACQM AKFIRGCGYH AVGAGNDLAN SVAYAILAGM
GEGGRLGSCI MPGVGPRVRL CKVFTDIDFE DAYDQPRTWG VREFCKTCKK CADSCPSGAI
SQDDEPTFQP TYEFSDEPGY TWNSHAGVSK WHSDSKRCFN FWVDNDTSCL NCIASCTFNE
PDFWHHWMMM AVNPMMPKFL HAFMAEAHPA FGYGGQGAEP IPGKVEKFWE SGADMRTNTS
MKNNIGTAG
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