| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4119 |
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| Symbol | fis |
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| ID | 5611433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5037788 |
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| End bp | 5038093 |
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| Gene Length | 306 bp |
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| Protein Length | 101 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935074 |
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| Product | DNA-binding protein Fis |
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| Protein accession | YP_001475851 |
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| Protein GI | 157377251 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG2901] Factor for inversion stimulation Fis, transcriptional activator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000216214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000721764 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTTGATC AGACTACTAA CACAGAAACT CATCAGCTTA CAGTTGGCAA AATTGAAACA
GCTAACGGTA CTATCAAGCC TCAGTTATTA CGTGACGCTG TAAAGCGCGC AGTAACAAAC
TTTTTCGCTC AGATGGACGG GCAAGAAGCT GAAGAAGTAT ATGAAATGGT GTTAAGCGAA
GTTGAAGCAC CTCTGCTAGA TATCATCATG CAGCATACCC GCGGCAACCA GACTCGTGCA
GCGAACATGC TAGGTATCAA CCGTGGTACT CTGCGTAAGA AATTGAAAAA GTACGGCATG
AACTAA
|
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| Protein sequence | MFDQTTNTET HQLTVGKIET ANGTIKPQLL RDAVKRAVTN FFAQMDGQEA EEVYEMVLSE
VEAPLLDIIM QHTRGNQTRA ANMLGINRGT LRKKLKKYGM N
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