| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4118 |
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| Symbol | |
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| ID | 5611432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5036801 |
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| End bp | 5037769 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935073 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001475850 |
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| Protein GI | 157377250 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000169739 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00096101 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGATTG GACCCTATCA ACTGAAAAAC CGGTTGATCG TGGCACCAAT GGCAGGTGTC
ACAGACCAAC CCTTTAGAAA TCTATGTCTT CGTTATGGTG CAGCCATGGC GGTGTCGGAG
ATGCTTTCGT CGAATCCTGA TGTTTGGGAT ACCGATAAGA GCCGCCAGCG CATGAGTCAT
GCTGGTGAAG ATGGGATACG CTCAGTACAA ATAGCAGGTG CCGATCCTGA GTTAATGGCC
AATGCCGCCG TTGTCAACGT ACAACAAGGG GCACAGATCA TTGATATCAA TATGGGTTGC
CCTGCGAAGA AAGTGAATAG AAAGCTAGCT GGTTCAGCTT TACTGCAAGA CCCTGTGCAG
GTAAAAGCAA TTTTACAAGC CGTGGTTGCC GCAGTGGATG TACCGGTAAC ACTGAAAATT
CGAACTGGAT GGGCTCCGGA GCATAGGAAT GGTGTTCAAA TCGCCCAGAT AGCCGAAGAT
TGTGGTATTG CCTCATTAGC CGTTCACGGC AGAACCAGGC AGTGCATGTA CAAGGGAAAT
GCCGAGTACG ACACGATTAA AGCTATTAAA AAGAATGTCT CGATCCCTGT TGTTGCTAAC
GGAGATATTG TCACTCCTGA AAAAGCACGT TTTGTGTTAG ATCAGACCGG TGCCGATGCT
CTCATGATAG GTCGGGGTGC TCAAGGAAGG CCTTGGATTT TCCGAGAAAT TCAACATTAT
CTGGAAACGG GTAATAAGCT AGCGCCTGTT GAGATGGATG AAAAGCGTCT TGTGATGCTG
GAACATCTTA AAAACTTATA TGCTCTGTAT GGTGAATATA AGGGTATCCG TTTCGCTAGA
AAACATGTTG GATGGTATTT GGACCAAGAT GAACAGCGTC CATTCCGGGC CGAATTTAAT
CGGCTGGAAA CTGTTGAAGA ACAAGGTTCC ATGGTGGAAC GCTATTTTGA TGAAATTGCA
CAGAATTAA
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| Protein sequence | MQIGPYQLKN RLIVAPMAGV TDQPFRNLCL RYGAAMAVSE MLSSNPDVWD TDKSRQRMSH
AGEDGIRSVQ IAGADPELMA NAAVVNVQQG AQIIDINMGC PAKKVNRKLA GSALLQDPVQ
VKAILQAVVA AVDVPVTLKI RTGWAPEHRN GVQIAQIAED CGIASLAVHG RTRQCMYKGN
AEYDTIKAIK KNVSIPVVAN GDIVTPEKAR FVLDQTGADA LMIGRGAQGR PWIFREIQHY
LETGNKLAPV EMDEKRLVML EHLKNLYALY GEYKGIRFAR KHVGWYLDQD EQRPFRAEFN
RLETVEEQGS MVERYFDEIA QN
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