| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4117 |
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| Symbol | prmA |
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| ID | 5610242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5035768 |
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| End bp | 5036649 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935072 |
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| Product | ribosomal protein L11 methyltransferase |
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| Protein accession | YP_001475849 |
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| Protein GI | 157377249 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2264] Ribosomal protein L11 methylase |
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| TIGRFAM ID | [TIGR00406] ribosomal protein L11 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0350894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000425949 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTTGGA TCCAGTTAAA AATTGATACC GATAACCAAC ATGCAGATGC CTTGAGCGAT
CTGTTAATGG AGGAAGGCTC TCTGTCTATT ACCCTGGAAG ATGGTAAAGA CACGCCTATT
TATGAGCCTA CTCTAGGTGA GACGCCGCTG TGGAATCACA CAGTGCTAAC AGCACTCTTT
GAAGCCGATA GAGATCTTGC CATTGTCGTT GAGCAGCTCA AACTGCAACC CTATTTAGGC
GAAGACTTTT CCTACAAGAT TGAGCAAGTC GAAGATAAAG ACTGGGAACG TGAGTGGATG
GATAACTTTC ACCCGATTAA GTTCGGTGAA CGCTTATGGA TCTGTCCCAG CTGGCGCGAA
ATCCCCGATC CAGATGCCGT TAATATCATC TTAGATCCAG GGTTAGCATT TGGTACCGGT
ACTCACCCAA CGACAGCCCT CTGTCTGGAG TGGTTAGATA GCTTAGATTT TGCCGATAAA
GAGGTGATCG ATTTTGGTTG TGGCTCAGGC ATCTTAGCCG TCGCAGCACT GAAACTCGGC
GCGACTAAAG TTACCGGCAT CGACATCGAT TACCAAGCCA TCGACGCATC TAAGGCCAAT
GCAGAACGCA ATGGTGTCGA AGATCAATTA GCCCTCTTCC TTCCCGAAGA TCAACCGAAA
GATCTACAGG CCGATATCTT AGTGGCAAAC ATTCTTGCGG GCCCGCTGAG AGAGCTTGCT
CCTTTAATTG CCGAAAAAGT AAAAACCGGC GGCCAATTGG CCTTGTCCGG ACTACTTAAA
GAACAAGCCG AAGAGGTTGC GGAGTTTTAC ACTCAATGGT TCGATATGGA TGAGCCTGCT
CACAAAGAGG ATTGGAGCCG CTTGACAGGA ATACGCAAAT AG
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| Protein sequence | MPWIQLKIDT DNQHADALSD LLMEEGSLSI TLEDGKDTPI YEPTLGETPL WNHTVLTALF
EADRDLAIVV EQLKLQPYLG EDFSYKIEQV EDKDWEREWM DNFHPIKFGE RLWICPSWRE
IPDPDAVNII LDPGLAFGTG THPTTALCLE WLDSLDFADK EVIDFGCGSG ILAVAALKLG
ATKVTGIDID YQAIDASKAN AERNGVEDQL ALFLPEDQPK DLQADILVAN ILAGPLRELA
PLIAEKVKTG GQLALSGLLK EQAEEVAEFY TQWFDMDEPA HKEDWSRLTG IRK
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