Gene Ssed_4114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4114 
Symbol 
ID5610239 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5031555 
End bp5033579 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content50% 
IMG OID640935069 
Productfumarate reductase flavoprotein subunit 
Protein accessionYP_001475846 
Protein GI157377246 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000002449 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGAAACTGA TATATACCGA TTCTTTAGTA GTCGGAGCTG GACTGGCCGG ACTCAGAGTT 
GCTATCGCCT CTAAAGAGCG TGGCCTTGAC ACTGTAGTGT TATCACTTAT TCCTGCAAAA
CGATCGCATT CTGCAGCCGC TCAAGGTGGT ATGCAGGCGA GTCTTGGAAA TACCGTTAAA
GGTATGGGTG ATGATGAAGA TATCCATTTT CAGGATACGG TCAAAGGTTC TGACTGGGGC
TGCGATCAGG ATGTGGCAAG GATGTTTGCT CATTGTGCTC CTAAAGCCGT GCGTGAGCTA
ACGAACTGGG GGGTGCCGTG GACACGTGTG ACTAAAGGCC CTCGTCAGGT GGTCGTTAAC
GCCGAAAAGG TGACTATCGA AGAGGCCGAA GAGGCTCATG GTCTGATTAA TGCGCGGGAC
TTTGGTGGTA CTAAAAAGTG GCGAACCTGT TATACCGCCG ATGGTACCGG TCACTCACTT
CTTTATGCCG TCGATAACAA AGCCATCTCT CTCGACATAC CCGTTCACGA AAGAGTCGAG
GCATTATCCC TTATTCACGA CGGCAAGCGG TGTCATGGTG TCGTTGCCCG CTGCATGATA
ACGGGCGAGC TTCGGGCCTA TATTGCCAAG TCGACCACGA TTGCAACCGG GGGCTATGGC
CGCATCTATG AAGTGTCGAC CAATGCTATT ATCTGTGAGG GAATAGGGCA GGCGCTCGCG
CTGGAAACCG GTGTGGCAAA ACTTGGCAAT ATGGAGGCGG TACAGTTCCA TCCAACCGCC
ATCGTGCCGG TCGGTATTTT GACAACCGAA GGTTGTCGTG GTGACGGAGG CCTGTTAAGA
GATAAAGATG GCCACCGTTT TATGCCGGAC TATGAGCCTG AAAAGAAAGA ACTCGCTTCC
CGTGATGTCG TATCACGTCG TATGACCGAA CATATTCGCA AAGGCAAGGG GGTCGATAGC
CCTTATGGTC CTCACCTGTG GTTAGATATT ACGCTTCTTG GTCGTAAACA TGTCGAAACC
AACCTGCGTG AAGTGAAAGA GATCTGTGAG AGCTTCTTAG GTATCGACCC TGCAAAAGAT
TGGATCCCGG TTCGCCCGAC TCAACATTAC TCTATGGGTG GTATACGCAC CGATAAAACA
GGACAAAACC CTCAGCTAAA AGGCTTATTC AGTGTGGGCG AAGCCGCTTG TTGGGACATG
CATGGCTTCA ACCGTCTGGG TGGCAACTCG CTGGCCGAGA CTGTAGTTGG CGGCATGATT
ATCGGTAAAT ATGTAGCCGA TTTCTGTCAG GAAAATACCT TAGAGATCAA CACTGGTTTG
GCCGAATCCT TTGTGGACAA GGTACGTAAT GAGATAGATG AACTTGTCGA AGGTCCGGGA
ACTGAGAGTC CATTCGCTTT GAGAAAAGAG ATGGAACGGA TCATGATGAA CTATGTCGGT
ATCTTCCGTA ATGGCCCTGA GTTAGAGAAG GCTGTGACTG AGCTTCAAGC GTTATTGAAG
CGTGCCAAAA ACTTAGGCCT TAAGTGTAAG AAACGCCACG CGAACCCTGA GTTGGTCGAA
GCACTGCGCG TGAAGCGCAT GCTTAAGGTC GCATTGACGG TTGCCTGTGG CGCTGCAGCG
CGAACAGAGA GTCGTGGCGC TCACGCTCGA GAAGATTTCC CGCAACGTAA CGATAAAGAC
TGGTTGAACA GAACCTTGTC CAGCTGGCCC GATGAAAATG CACTCACACC TGAGCTAGAC
TACGAAGAGC TCGATGTGAT GAAGATGGAG TTGCCACCCG GATATCGCGG CTATGGGATT
AACAATGCGA TTGCCCATCC CGATACCGAT AAGCGCGAAA AAGAGATCAC TAAAATTTTA
AGTGAGCTGG GAGATGACGC CGATCGTTAT CAGCGTCAGC AAGCATTGAT GCCATTCGAA
GTTCCTGAAG CTTTGATGGC GAGAAATGAA CGCTTATGTG ACAACTTAGA TAGACCTGCC
TCAGCCGTGC CTGGAGAAGA GTCTGAAGGA GAGCAAGCAT TATGA
 
Protein sequence
MKLIYTDSLV VGAGLAGLRV AIASKERGLD TVVLSLIPAK RSHSAAAQGG MQASLGNTVK 
GMGDDEDIHF QDTVKGSDWG CDQDVARMFA HCAPKAVREL TNWGVPWTRV TKGPRQVVVN
AEKVTIEEAE EAHGLINARD FGGTKKWRTC YTADGTGHSL LYAVDNKAIS LDIPVHERVE
ALSLIHDGKR CHGVVARCMI TGELRAYIAK STTIATGGYG RIYEVSTNAI ICEGIGQALA
LETGVAKLGN MEAVQFHPTA IVPVGILTTE GCRGDGGLLR DKDGHRFMPD YEPEKKELAS
RDVVSRRMTE HIRKGKGVDS PYGPHLWLDI TLLGRKHVET NLREVKEICE SFLGIDPAKD
WIPVRPTQHY SMGGIRTDKT GQNPQLKGLF SVGEAACWDM HGFNRLGGNS LAETVVGGMI
IGKYVADFCQ ENTLEINTGL AESFVDKVRN EIDELVEGPG TESPFALRKE MERIMMNYVG
IFRNGPELEK AVTELQALLK RAKNLGLKCK KRHANPELVE ALRVKRMLKV ALTVACGAAA
RTESRGAHAR EDFPQRNDKD WLNRTLSSWP DENALTPELD YEELDVMKME LPPGYRGYGI
NNAIAHPDTD KREKEITKIL SELGDDADRY QRQQALMPFE VPEALMARNE RLCDNLDRPA
SAVPGEESEG EQAL