Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4114 |
Symbol | |
ID | 5610239 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5031555 |
End bp | 5033579 |
Gene Length | 2025 bp |
Protein Length | 674 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640935069 |
Product | fumarate reductase flavoprotein subunit |
Protein accession | YP_001475846 |
Protein GI | 157377246 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000002449 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGAAACTGA TATATACCGA TTCTTTAGTA GTCGGAGCTG GACTGGCCGG ACTCAGAGTT GCTATCGCCT CTAAAGAGCG TGGCCTTGAC ACTGTAGTGT TATCACTTAT TCCTGCAAAA CGATCGCATT CTGCAGCCGC TCAAGGTGGT ATGCAGGCGA GTCTTGGAAA TACCGTTAAA GGTATGGGTG ATGATGAAGA TATCCATTTT CAGGATACGG TCAAAGGTTC TGACTGGGGC TGCGATCAGG ATGTGGCAAG GATGTTTGCT CATTGTGCTC CTAAAGCCGT GCGTGAGCTA ACGAACTGGG GGGTGCCGTG GACACGTGTG ACTAAAGGCC CTCGTCAGGT GGTCGTTAAC GCCGAAAAGG TGACTATCGA AGAGGCCGAA GAGGCTCATG GTCTGATTAA TGCGCGGGAC TTTGGTGGTA CTAAAAAGTG GCGAACCTGT TATACCGCCG ATGGTACCGG TCACTCACTT CTTTATGCCG TCGATAACAA AGCCATCTCT CTCGACATAC CCGTTCACGA AAGAGTCGAG GCATTATCCC TTATTCACGA CGGCAAGCGG TGTCATGGTG TCGTTGCCCG CTGCATGATA ACGGGCGAGC TTCGGGCCTA TATTGCCAAG TCGACCACGA TTGCAACCGG GGGCTATGGC CGCATCTATG AAGTGTCGAC CAATGCTATT ATCTGTGAGG GAATAGGGCA GGCGCTCGCG CTGGAAACCG GTGTGGCAAA ACTTGGCAAT ATGGAGGCGG TACAGTTCCA TCCAACCGCC ATCGTGCCGG TCGGTATTTT GACAACCGAA GGTTGTCGTG GTGACGGAGG CCTGTTAAGA GATAAAGATG GCCACCGTTT TATGCCGGAC TATGAGCCTG AAAAGAAAGA ACTCGCTTCC CGTGATGTCG TATCACGTCG TATGACCGAA CATATTCGCA AAGGCAAGGG GGTCGATAGC CCTTATGGTC CTCACCTGTG GTTAGATATT ACGCTTCTTG GTCGTAAACA TGTCGAAACC AACCTGCGTG AAGTGAAAGA GATCTGTGAG AGCTTCTTAG GTATCGACCC TGCAAAAGAT TGGATCCCGG TTCGCCCGAC TCAACATTAC TCTATGGGTG GTATACGCAC CGATAAAACA GGACAAAACC CTCAGCTAAA AGGCTTATTC AGTGTGGGCG AAGCCGCTTG TTGGGACATG CATGGCTTCA ACCGTCTGGG TGGCAACTCG CTGGCCGAGA CTGTAGTTGG CGGCATGATT ATCGGTAAAT ATGTAGCCGA TTTCTGTCAG GAAAATACCT TAGAGATCAA CACTGGTTTG GCCGAATCCT TTGTGGACAA GGTACGTAAT GAGATAGATG AACTTGTCGA AGGTCCGGGA ACTGAGAGTC CATTCGCTTT GAGAAAAGAG ATGGAACGGA TCATGATGAA CTATGTCGGT ATCTTCCGTA ATGGCCCTGA GTTAGAGAAG GCTGTGACTG AGCTTCAAGC GTTATTGAAG CGTGCCAAAA ACTTAGGCCT TAAGTGTAAG AAACGCCACG CGAACCCTGA GTTGGTCGAA GCACTGCGCG TGAAGCGCAT GCTTAAGGTC GCATTGACGG TTGCCTGTGG CGCTGCAGCG CGAACAGAGA GTCGTGGCGC TCACGCTCGA GAAGATTTCC CGCAACGTAA CGATAAAGAC TGGTTGAACA GAACCTTGTC CAGCTGGCCC GATGAAAATG CACTCACACC TGAGCTAGAC TACGAAGAGC TCGATGTGAT GAAGATGGAG TTGCCACCCG GATATCGCGG CTATGGGATT AACAATGCGA TTGCCCATCC CGATACCGAT AAGCGCGAAA AAGAGATCAC TAAAATTTTA AGTGAGCTGG GAGATGACGC CGATCGTTAT CAGCGTCAGC AAGCATTGAT GCCATTCGAA GTTCCTGAAG CTTTGATGGC GAGAAATGAA CGCTTATGTG ACAACTTAGA TAGACCTGCC TCAGCCGTGC CTGGAGAAGA GTCTGAAGGA GAGCAAGCAT TATGA
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Protein sequence | MKLIYTDSLV VGAGLAGLRV AIASKERGLD TVVLSLIPAK RSHSAAAQGG MQASLGNTVK GMGDDEDIHF QDTVKGSDWG CDQDVARMFA HCAPKAVREL TNWGVPWTRV TKGPRQVVVN AEKVTIEEAE EAHGLINARD FGGTKKWRTC YTADGTGHSL LYAVDNKAIS LDIPVHERVE ALSLIHDGKR CHGVVARCMI TGELRAYIAK STTIATGGYG RIYEVSTNAI ICEGIGQALA LETGVAKLGN MEAVQFHPTA IVPVGILTTE GCRGDGGLLR DKDGHRFMPD YEPEKKELAS RDVVSRRMTE HIRKGKGVDS PYGPHLWLDI TLLGRKHVET NLREVKEICE SFLGIDPAKD WIPVRPTQHY SMGGIRTDKT GQNPQLKGLF SVGEAACWDM HGFNRLGGNS LAETVVGGMI IGKYVADFCQ ENTLEINTGL AESFVDKVRN EIDELVEGPG TESPFALRKE MERIMMNYVG IFRNGPELEK AVTELQALLK RAKNLGLKCK KRHANPELVE ALRVKRMLKV ALTVACGAAA RTESRGAHAR EDFPQRNDKD WLNRTLSSWP DENALTPELD YEELDVMKME LPPGYRGYGI NNAIAHPDTD KREKEITKIL SELGDDADRY QRQQALMPFE VPEALMARNE RLCDNLDRPA SAVPGEESEG EQAL
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