| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4113 |
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| Symbol | frdB |
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| ID | 5609769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5030827 |
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| End bp | 5031558 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935068 |
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| Product | fumarate reductase iron-sulfur subunit |
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| Protein accession | YP_001475845 |
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| Protein GI | 157377245 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
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| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000602328 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGTCAGG GCCGCACATT AACCTTTAAT ATTTTTCGCT ACGACCCTCA AGAGCCGGGT
GACAAGCCTA AGATGGTGAA ATACCAGCTC GAAGAAGCGC CGGGAATGAC CGTGTTTATC
GCACTCAATA TGTTGCGTGA ACATCAAGAT ACCTCTCTGC AGTTCGACTT TGTCTGCCGG
GCAGGAATAT GTGGTAGCTG TGCCATGGTG ATCAATGGTT TCCCGACACT GGCATGCCGT
ACATTAACCA GTAAATATCC CAAGGGCGAA ATTACTCTGA TGCCACTGCC TGGCTTCGAA
TTAATCGGCG ACTTGTCGGT TAATACGGGG AAATTTATGC GTGAACTCGC CGAACGTCTT
AAGTTATGGC TACAACCTAA CTTAGATGAT GTCGACGTGC ATCGTCTCGA AGCTCCAATG
GCTCCGGAAG AAGCGGCTAA GCTGTATGAG TTAGAGCGTT GTGTCGAGTG TGGTGTCTGT
GTCTCAGCCT GTGCGACTAA GCAGATGCGT GACAGTTTTG TCGGCGCTGT AGGTATGATG
AAAATTGCAC GCTTCGAGCT GGATAGCCGT GATGAGCGCA CCGTGGAAGA TTTCTACCAT
GTTATCGGTA ATCAGGATGG TGTATTTGGT TGTATGACCC TGTTAGGTTG TCAGGATAAC
TGTCCCAAAG ATCTACCGCA CATGCAGCAG ATAGCTTATC TTAGACGTAA GATGGCGGGT
GCACTCGTTT AA
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| Protein sequence | MSQGRTLTFN IFRYDPQEPG DKPKMVKYQL EEAPGMTVFI ALNMLREHQD TSLQFDFVCR
AGICGSCAMV INGFPTLACR TLTSKYPKGE ITLMPLPGFE LIGDLSVNTG KFMRELAERL
KLWLQPNLDD VDVHRLEAPM APEEAAKLYE LERCVECGVC VSACATKQMR DSFVGAVGMM
KIARFELDSR DERTVEDFYH VIGNQDGVFG CMTLLGCQDN CPKDLPHMQQ IAYLRRKMAG
ALV
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