| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4112 |
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| Symbol | |
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| ID | 5609768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5029811 |
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| End bp | 5030713 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935067 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475844 |
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| Protein GI | 157377244 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000269133 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGATAA ACGATCTAAG GCTTTTTGTT CGGGTTGCCG ATTGTGGCAG CATCACGGCC
GCGGCTACAG AGTTAGAACT CTCTCCGGCT ACGGCGAGTG CAGCACTTAA GCGGTTAGAG
AAACAACTTG GAACCAGCTT GTTTATTCGC AGCACAAGAA GCCTTAGGCT TACCGATACC
GGTGAACGTT ATCTGATACA TTGTCGCAGA GCATTATCAG ACTTAGCGCT GGGCCAGCAA
GCGGTTAATG ACGTGAGGGA GAAGATCTCT GGTGTCGTCA GTCTTGCTGT GCCATCGGAT
GTGGGTCGCC ACGTTTTACT GCCTTGGCTA GATGAGTTTA TGGATCAATA TCCTGAACTC
AAGCTTAGGC TACATATCGG CGATACATTA TCTGATTTTT ATCATGATAA AGTCGATGTG
GCACTGCGTT TAGGTACGCC CAAAGACTCA TCCTTAGTCG CCTTTGAGAT AGCTAAAGTG
AAAAGGCTAC TCTGTGCCTC TCCAGCATAT ATCGCCAAGT ATGGTGAGGT CACCACAATC
GATCAGTTAT CAGATCACAA CTGTTTGTTT TTTATGTTAG AAGAACGGAC TCATGATCAG
TGGCGATTCA GCAAGAATGG CCGTGAATTT AAGGTCAGAG TCACGGGGAA TCGTACCTGT
AATGACGCTG AGGTTGCAAG GCGCTGGGCA GTGGCTGGTA AAGGTGTTGT TTACAAATCC
TCTCTGGATT TAGAGGGGGA TATTACCAGT GGAAGACTGG TACCAATGAT GACAGATTAT
CAAGGTGAAT CGGCCGATCT CTATCTTGTA TGCCCAGGAA GAGAGCATGT CACGCCAGTT
ATCTTGTTAT TAAGAGATAT GCTGAGAGAA AGGTGTAGGC AGAGGCTGGA AGCTAGGGGC
TAG
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| Protein sequence | MQINDLRLFV RVADCGSITA AATELELSPA TASAALKRLE KQLGTSLFIR STRSLRLTDT
GERYLIHCRR ALSDLALGQQ AVNDVREKIS GVVSLAVPSD VGRHVLLPWL DEFMDQYPEL
KLRLHIGDTL SDFYHDKVDV ALRLGTPKDS SLVAFEIAKV KRLLCASPAY IAKYGEVTTI
DQLSDHNCLF FMLEERTHDQ WRFSKNGREF KVRVTGNRTC NDAEVARRWA VAGKGVVYKS
SLDLEGDITS GRLVPMMTDY QGESADLYLV CPGREHVTPV ILLLRDMLRE RCRQRLEARG
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