Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4110 |
Symbol | |
ID | 5612081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5027685 |
End bp | 5028011 |
Gene Length | 327 bp |
Protein Length | 108 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640935065 |
Product | thioredoxin |
Protein accession | YP_001475842 |
Protein GI | 157377242 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3118] Thioredoxin domain-containing protein |
TIGRFAM ID | [TIGR01068] thioredoxin |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.465308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000724164 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGACA AAATTGTATA CCTAAGTGAC GACAGCTTCG AAAATGACGT AATTAACTCT GAGCTACCAG TGATCGTAGA TTTTTGGGCT GAGTGGTGTG GCCCTTGTAA AATGATTGCC CCAATCCTTG ATGACGTTGC CGAAGAGTAT GCAGGTAAGG TCACCATCGC TAAGCTGAAT GTGGATCAAA ACAATGTATC GCCAGCTAAA TACGGCGTTC GTGGCATCCC AACTTTGCTT ATTTTCAAGA ACGGCGAATT GGCCGGAACA AAAGTTGGCG CGCTTTCTAA AACTCAACTG AAAGAGTTTA TCGACGCCCA GCTATAG
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Protein sequence | MSDKIVYLSD DSFENDVINS ELPVIVDFWA EWCGPCKMIA PILDDVAEEY AGKVTIAKLN VDQNNVSPAK YGVRGIPTLL IFKNGELAGT KVGALSKTQL KEFIDAQL
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