Gene Ssed_4110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4110 
Symbol 
ID5612081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5027685 
End bp5028011 
Gene Length327 bp 
Protein Length108 aa 
Translation table11 
GC content45% 
IMG OID640935065 
Productthioredoxin 
Protein accessionYP_001475842 
Protein GI157377242 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3118] Thioredoxin domain-containing protein 
TIGRFAM ID[TIGR01068] thioredoxin 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.465308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000724164 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGACA AAATTGTATA CCTAAGTGAC GACAGCTTCG AAAATGACGT AATTAACTCT 
GAGCTACCAG TGATCGTAGA TTTTTGGGCT GAGTGGTGTG GCCCTTGTAA AATGATTGCC
CCAATCCTTG ATGACGTTGC CGAAGAGTAT GCAGGTAAGG TCACCATCGC TAAGCTGAAT
GTGGATCAAA ACAATGTATC GCCAGCTAAA TACGGCGTTC GTGGCATCCC AACTTTGCTT
ATTTTCAAGA ACGGCGAATT GGCCGGAACA AAAGTTGGCG CGCTTTCTAA AACTCAACTG
AAAGAGTTTA TCGACGCCCA GCTATAG
 
Protein sequence
MSDKIVYLSD DSFENDVINS ELPVIVDFWA EWCGPCKMIA PILDDVAEEY AGKVTIAKLN 
VDQNNVSPAK YGVRGIPTLL IFKNGELAGT KVGALSKTQL KEFIDAQL