| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4109 |
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| Symbol | |
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| ID | 5612080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5026203 |
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| End bp | 5027510 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935064 |
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| Product | ATP-dependent RNA helicase RhlB |
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| Protein accession | YP_001475841 |
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| Protein GI | 157377241 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0297113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000114369 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGAAA CACATTTATC TAATCAGAAG TTTGCCGACT TTTCTCTTCA AACAGAGATA
AAAACAGCAC TTAACGAGAG CGGCTTTGAA TACTGCACGC CTATTCAAGC GTTATCTCTA
CCTATTCTTC TTCAGAAAAA AGATATTGCG GGTCAAGCGC AAACTGGCAC GGGAAAAACG
TTAGCTTTTC TTGTTGCCAC GTTCAATCAC CTGCTTACCA CCCCTATTCC GGAAGGCCGC
CAGCTTAATC AGCCCAGAGC GATTATTATG GCCCCCACTC GTGAACTTGC AATTCAGATC
GCCAAAGATG CGGATCTGCT TGCTAAACAC ACAGGACTGA AAGTCGGAAT AGTCTACGGT
GGCGAAAGTT ATGAAGTTCA GCGTAAAGTG CTGGATAAAG GTGTCGATAT TCTTATCGGA
ACTACTGGCC GTATCATAGA TTATGTTCGT CAGGGAATCA TTAACGTCAG TGCAATTCAA
GCTGTCGTTT TAGATGAAGC CGATCGTATG TTTGACCTCG GCTTTATTAA AGATATTCGT
TTCCTTTTCA GACGCATGCC AGATGCCAAG TCGCGTCTGA ATATGCTGTT TTCTGCTACT
CTGTCGATGA AAGTGCAGGA GCTGGCTTAT GATCATATGA ATGAGCCAGA GAAAGTTGAA
ATCGCACCGA ACGAAAAAAC CTCTAAGAAC ATCAAAGAGG AGATCTTCTA TCCATCTATG
GATGAGAAGA TGCGTCTGTT GCTTACCCTT CTCGAGGAAG ATTGGCCGGA CAAGGCGATT
GTATTCTCAA ATACCAAACA CAGCTGTGAA AAATTATGGT CTTGGTTAGA AGGCGATGGA
CACCGAGTTG GATTATTGAC CGGCGATGTT CCACAAAAGA AACGTATTCG TATTCTTGAG
CTGTTCACCG AAGGAAAACT TGATGTTCTG GTTGCTACCG ATGTAGCCGC TCGTGGTTTG
CATATTTCAG ATGTTTCTCA CGTATATAAC TATGATCTTC CCGATGATTG CGAAGATTAT
GTACACCGCA TTGGCCGTAC GGGTCGCGCG GGTAAGAAAG GTGTATCGGT TAGTTTTGCC
TGTGAAGAGT ATGCGTTGAA CTTGCCTGCA ATTGAAGAGT ATATCAATCA CACTATTCCT
GTGACTAACT ATGATAGCGA AGCGTTACTG GATGACATTC CAGCTCCTGT CAGAGTACAC
AGAAAGCATA ACAGTCGACC TCAGGGACGT TCTGGCTCGG GTGGAAAGCC ACGTAGTGGC
AATCGTAACG CCCCACGTCG TCACGACAAA ACTCGCAGAC ACTCGTAA
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| Protein sequence | MSETHLSNQK FADFSLQTEI KTALNESGFE YCTPIQALSL PILLQKKDIA GQAQTGTGKT
LAFLVATFNH LLTTPIPEGR QLNQPRAIIM APTRELAIQI AKDADLLAKH TGLKVGIVYG
GESYEVQRKV LDKGVDILIG TTGRIIDYVR QGIINVSAIQ AVVLDEADRM FDLGFIKDIR
FLFRRMPDAK SRLNMLFSAT LSMKVQELAY DHMNEPEKVE IAPNEKTSKN IKEEIFYPSM
DEKMRLLLTL LEEDWPDKAI VFSNTKHSCE KLWSWLEGDG HRVGLLTGDV PQKKRIRILE
LFTEGKLDVL VATDVAARGL HISDVSHVYN YDLPDDCEDY VHRIGRTGRA GKKGVSVSFA
CEEYALNLPA IEEYINHTIP VTNYDSEALL DDIPAPVRVH RKHNSRPQGR SGSGGKPRSG
NRNAPRRHDK TRRHS
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