| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4104 |
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| Symbol | |
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| ID | 5613134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5018065 |
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| End bp | 5019897 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935059 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475836 |
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| Protein GI | 157377236 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.147884 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTTCT CTACCGGAGT CCGGGCAGAA ACCATTCTCG CCATCGGTGG TGAAGAAGAG
AGCGTGCTCG AACTCTCCCC CTGGCTCTAC TTCTCTCCGG CCAATGAAGG GGAGGAGTTT
GAGCAGATAA AAAGATTAAG CTCAAACCAA TGGCACCGTT TAACCCCCAA ATACAATAAC
CACATTGGCA TCGATCCTTT TTGGGTCAAA TTTAGTGTCT ACAATTACGA AGAGGTGGAG
TTGGACCGTA TACTCTCACT CGCAAATCCT CATATTGACA GAATAGAGCT CTATCACCTG
GTTCAGGGCA AGATAATTGA CAAGGTGGTG ATGGGCGATA GCCTCCCTTT TTCTCAAAGG
CCGCTGATCA ATAATATTTT CCTCTACCCC TTCGAGTTAG AGTCAGAGAA GCTGCATACT
TTCTACCTTA AGATTGAGAC CGAAGGAAGC GCATCATTAC CCTTGAGTTT ATGGTCACAA
AGCGCCTTTG CCAAGAATAT TGAAGCCACC TCATTAACTC ATGGTTTTCA GCTCGGAGCC
TTGACGGCTA TCGGTATATT TAGTCTTTTT ATCGCGATAA CTTCCCGCTC ATTTAGCTAC
AGTTATTACT CCGGCTATGT ACTCTCTGTC ACCCTACTGG TTGCCACTCT GCATGGCTTC
GCATTTCGGT TTATTTGGCC GATGTGGCCG GCCCTGCAAC AGTTAATGGT CCCACTACTT
GTTCCACTGA CGATGTTTTT TGCGCTGCTC TTTACCGAAA AAGTCCTCCA GCTTAAATAC
CATAATGTCC GCATGTTGCG GATCTGTCGT TATGGTGCAG CCTATGCGCT CTTGTTGACC
TTAACGACGC CTTTTTTAGA CTATGTGCTT GCCCTATATA TCAACATCAT TTCTGTGCTG
TTCATTACCG TATTATTGAT GGGAATGGCT GTTATCCAGG CATTCAAAGG ACATAAACTC
GCTAAATTAT ACACTCTTGC CTGGGGCGGC ATGTTAGCCG GCTCCTTCAT CACAGGATTG
ATGTATCTAG GCTTTATTGA GCTTCCTATT AAACATCTCA CGCCTGTAAT GCTGGGGTTA
ATGTTTGAAA TTTTATTTAT GGCTGCCATC TTGGCAATTC GTTATAACGA CGAACGAAAA
GCAAAACTCA GGATCCAACA AGAAGCATTG GTGCAGGCAC AAAGGATCAG ACAGACTCGA
GAAGAGGCCC TGCTCATAGA AGCCGATAGC AATGAGAAAC TCGAACAGAT GGTTCAGGAG
CGTACCTTAG AGCTGGAAAT AGCACTGAGA GAATTGAACG AAGCCAACCA AAAACTCACC
GAGCAAGCTA CGGTAGACAG TTTAACCGGA GTTAAAAACC GGGCGGCTTT CGATAAGCGA
TTACTCGCCG AGGGGCGACT CAGCCGCAGA CAGCAAACCC CTATGGCCAT CTTGATGTTA
GATATCGATA GATTTAAATC CATTAATGAC ACCTATGGCC ACTTAGCCGG CGATCAGACC
CTGAGACTCA TCGCGCAGAC ATTAAAAGAG AATTTAAAAC GTCCAGCGGA TCTGGTATCA
CGTTTTGGTG GCGAGGAATT TGCTATCATA TTGCCTAATA CAGCCGAAGA AGGGGCTGTA
CTGGTCGCAG AGTTGATACG AAAAACGGTT GCCGAACTCC CTATCCACTG GGAAAATAAA
ACCATCCCAC TCACCATAAG CATAGGTGTG AGTGCGGAGA TCATTAATAC CGAAAATCAA
CCAAACAACT TATTAGAACA AGCGGATAAA GCACTTTATC GCGCAAAGAA TAATGGGCGA
AACTGCGTGA TGGTTTATAC GCCAGAGCCT TAA
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| Protein sequence | MLFSTGVRAE TILAIGGEEE SVLELSPWLY FSPANEGEEF EQIKRLSSNQ WHRLTPKYNN
HIGIDPFWVK FSVYNYEEVE LDRILSLANP HIDRIELYHL VQGKIIDKVV MGDSLPFSQR
PLINNIFLYP FELESEKLHT FYLKIETEGS ASLPLSLWSQ SAFAKNIEAT SLTHGFQLGA
LTAIGIFSLF IAITSRSFSY SYYSGYVLSV TLLVATLHGF AFRFIWPMWP ALQQLMVPLL
VPLTMFFALL FTEKVLQLKY HNVRMLRICR YGAAYALLLT LTTPFLDYVL ALYINIISVL
FITVLLMGMA VIQAFKGHKL AKLYTLAWGG MLAGSFITGL MYLGFIELPI KHLTPVMLGL
MFEILFMAAI LAIRYNDERK AKLRIQQEAL VQAQRIRQTR EEALLIEADS NEKLEQMVQE
RTLELEIALR ELNEANQKLT EQATVDSLTG VKNRAAFDKR LLAEGRLSRR QQTPMAILML
DIDRFKSIND TYGHLAGDQT LRLIAQTLKE NLKRPADLVS RFGGEEFAII LPNTAEEGAV
LVAELIRKTV AELPIHWENK TIPLTISIGV SAEIINTENQ PNNLLEQADK ALYRAKNNGR
NCVMVYTPEP
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