| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4066 |
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| Symbol | |
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| ID | 5612897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4978201 |
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| End bp | 4980042 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935021 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001475798 |
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| Protein GI | 157377198 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGCGG TACTCTTCAT CATAGTAATG CTTATATCAA ATGCAGCCTT AGCTCACTCC
GATGAAGAGG CGAGTCAGCT CAACACAGAC ATGCGTCTTC CTGAGCGTCA TTTGCGGGTC
GGTGTACTGG CCAACCATGG TGTTATGCAG GGCAAGCTGC GCTGGCAGCC TATGATGGAC
TATCTGTCCG AAAGAGTACC GGGAGCAAAT TTCGAGGTCG TGCCTTTAGG TTTTGAAGAT
ATGAGCCAAC AGATGCTCAA TCATGATATT CAGTTTATGA TCACCAACCC GGGCCAATAT
TTTAACCTGA GCAGCAACTT TCCCCTCTCC TGGTTAGCGA CGATGAAGAG CCGTAAGCAT
CAAGGCACCA CGTTTGCCAT CGGCGCGACG ATTATTGTTC GTGCCGACAG TGATATCTAT
ACCCTTAACG ATCTCAGAGG TAAGAGTATC GTAGCCAGCG GTCCTCAGGC GCTGGGCGGC
TATCAAGCTG CCGTCGGCTT GTTACATAAG ATGGGCTACT CTCCGGAGCA ATACTTTGGC
GACCTGCGTT TCTTAGGTTT TCCACTGGAA CCCATCGTCT ATCAGGTAAG GGATAAAACC
GTCGAGGCGG CGATCACGCC TTTCTGTACC CTCGAAGAGA TGATAGACAG TGGCCTGGTA
AAGAAAGAGG ACTTTCGGGT TATTCACCCC ACCTTGCCCA AAGGGTACGA CTGCCTGGTC
AGTACCCAAC TCTATCCCAA TTGGTCATTT GCCGCCGCCG AGACGGTGCC GACTCAGATA
ACACGGGCAA TAACCCAGGC GCTGTATGAC TTAGAGCCCG GTGACGAAGC CGCGATTAGC
GCAAAAACTA TGGGATGGAC CGCCCCCGTT AGCCAACTCA AGGTGATCAA ACTTTTTAAA
GAGTTACAGT TGAAAACTCC GCCACCGCCG CTCTATCAAA CTGTCTTGAA ATGGATGGAG
AGAAACAAGG AGTGGGGAGG CGCGCTGCTG TTACTCTTCC TTATTTCGAC GGTTTATCAC
CTCTGGCTGG AGTACAAGTT CAGGCAAAAG AGTGAGTTTC TTATCGATAC CGAGAGACAG
CTACAGGACA AGGCCCTGCA GCTGGAGCGC CTGCAGAGTA CCGCAATTTT AGGGGAGATA
GGTTCCGGAC TCGCTCATGA GCTGAATCAA CCCATAGCGG CCATCACTCA ATACAGTGAA
GGGGGCATGA TGCATCTCAA TAGTCTGGGA AAGGCGGACG CAGAAACCTA TGAAATATTA
GCGAAAATCA ATGCGCAATC CCTGCGAGCC GGCGCCGTAG TTCATCGGAT CAGAGGGTTA
CTGAAACGAC GAGAAACATC GGCCGAGATG ATTAACTTCG ATGAGGTCAT GAATAACTCA
TTAGTGTTGT TTTCCGCCGA GTTTAAACGG CACTCAGTGC AAGCGAAAAT CAACACTCAC
GGCACCCCCT TTCAGCTCAA AGGCGATGAG GTTGGTTTGA GCCAGGTGAT TGCCAATATC
ATCAAAAATA GTTTAGACGC CTTCGGCGGG GACGTTAAAG ACAGTAGTGA TGGTGACAAG
AGAGTGAGTA TCTGGGTGAA TTATCGGGTC GACTCAGTAG AGGTGCTATT TTTCGATAAT
GGCCCGGGGC TGCAGAAGTC AGCCCATGAG TTAATGGCAT CATTCTGCTC TACCAAACGA
GACGGTCTGG GCTTAGGGTT AGCCATCTGT AAAGATGTGA TCTCTCAGCA TGATGGCCAG
TTCACCATTC AAAATTGCAG TGAGCTCGCC AAGGAACAAG AGCTTCCCTG GCAACAGGGC
TGTGCGGTGA AGATAGTGTT GCCAAAAGCT ATTGATCATT AA
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| Protein sequence | MPAVLFIIVM LISNAALAHS DEEASQLNTD MRLPERHLRV GVLANHGVMQ GKLRWQPMMD
YLSERVPGAN FEVVPLGFED MSQQMLNHDI QFMITNPGQY FNLSSNFPLS WLATMKSRKH
QGTTFAIGAT IIVRADSDIY TLNDLRGKSI VASGPQALGG YQAAVGLLHK MGYSPEQYFG
DLRFLGFPLE PIVYQVRDKT VEAAITPFCT LEEMIDSGLV KKEDFRVIHP TLPKGYDCLV
STQLYPNWSF AAAETVPTQI TRAITQALYD LEPGDEAAIS AKTMGWTAPV SQLKVIKLFK
ELQLKTPPPP LYQTVLKWME RNKEWGGALL LLFLISTVYH LWLEYKFRQK SEFLIDTERQ
LQDKALQLER LQSTAILGEI GSGLAHELNQ PIAAITQYSE GGMMHLNSLG KADAETYEIL
AKINAQSLRA GAVVHRIRGL LKRRETSAEM INFDEVMNNS LVLFSAEFKR HSVQAKINTH
GTPFQLKGDE VGLSQVIANI IKNSLDAFGG DVKDSSDGDK RVSIWVNYRV DSVEVLFFDN
GPGLQKSAHE LMASFCSTKR DGLGLGLAIC KDVISQHDGQ FTIQNCSELA KEQELPWQQG
CAVKIVLPKA IDH
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