| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4041 |
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| Symbol | |
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| ID | 5614023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4950643 |
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| End bp | 4951803 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934996 |
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| Product | cystathionine gamma-synthase |
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| Protein accession | YP_001475773 |
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| Protein GI | 157377173 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC GTAAGTTAGC CACAATTGCA GTCCGTCAAG GGATTGAGTC TGATACTCAG
TATGGTGCGG TCGTACCACC AATCTACCTT TCTACTAATT ACTCTTTCGA CGGGCACAAG
AATCCCAGAG ATTTTGATTA TAGTCGCTCG GGGAATCCGA CCCGCTCAAT CCTTGGAGAT
GCTATCGCCG GATTAGAAAA GGGAGCAACG GGTGTCGTGA CCTGTACCGG GATGGCGGCA
ATTACTCTGG TGACGAGTCT GTTGGGCCCC GATGATCTGT TAGTGGTTCC CCATGACTGC
TATGGCGGTA GCTACCGCTT GTTTACCAAC TTAGCGAAGA AGGGCCAGTT TAAGTTGGCT
GTTGTCGATC AGACCGATGA GTTAGCCCTA CAAGATGCTA TAGCGCAAAA CCCTAAGATG
GTTTGGCTCG AGACACCCTC AAACCCACTG CTGCGCGTGG TCGATATCGA GGCTATCGCG
AAGGCGAGTC ATGCAGTCGA TGCTCTCGTA GTGGTAGACA ACACGTTCCT TTCGCCTATC
TTGCAGCAAC CTCTGCTGCT CGGTGCGGAT ATCGTTATCC ACTCTACGAC CAAATATATA
AATGGACACA GTGATGTGGT TGGCGGCGCC GTGGTAGCTA AAGACGAGGA GTTAGGGGAG
TTATTGCACT GGTGGTCAAA TACCTTAGGC CTGACCGGCT CGGCGTTCGA TAGCTATCTG
ACGTTACGTG GTATTCGTAC CCTTGCCGTA CGTATTCGAG AGCATCAGGC GAACGCCCAA
AGAGTACTGG ATACGCTGAC AGCGAGTAGT GTCGTCGATA AAGTTTATTA TCCGGGCCTT
AAGGATCACC CCGGTCATGA GATCGCCGCG AAACAACAAA AAGGCTTCGG CGCAATGTTA
AGTTTCGAGC TTAAGGGGGG AGAAGCCGAG TTAGTGGCCT TCCTCGAGCA ACTTAGCGTG
TTCTCCGTCG CAGAAAGTTT AGGTGGCGTA GAGAGTTTAG TCGCGGTTCC TGCGACAATG
ACCCATAGAG CAATGGAGCC TGAGGCTCGA GCCGAAGCTG GGGTGAAAGA TACCCTTATC
CGTCTTTCTG TAGGTATTGA AGATGCAGAT GATTTAGTTG CTGATATACA GGCAGGACTT
GCAGCGGCAT TAGCTTGTTA A
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| Protein sequence | MTERKLATIA VRQGIESDTQ YGAVVPPIYL STNYSFDGHK NPRDFDYSRS GNPTRSILGD
AIAGLEKGAT GVVTCTGMAA ITLVTSLLGP DDLLVVPHDC YGGSYRLFTN LAKKGQFKLA
VVDQTDELAL QDAIAQNPKM VWLETPSNPL LRVVDIEAIA KASHAVDALV VVDNTFLSPI
LQQPLLLGAD IVIHSTTKYI NGHSDVVGGA VVAKDEELGE LLHWWSNTLG LTGSAFDSYL
TLRGIRTLAV RIREHQANAQ RVLDTLTASS VVDKVYYPGL KDHPGHEIAA KQQKGFGAML
SFELKGGEAE LVAFLEQLSV FSVAESLGGV ESLVAVPATM THRAMEPEAR AEAGVKDTLI
RLSVGIEDAD DLVADIQAGL AAALAC
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