| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4039 |
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| Symbol | metF |
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| ID | 5610111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4946849 |
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| End bp | 4947739 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934994 |
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| Product | 5,10-methylenetetrahydrofolate reductase |
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| Protein accession | YP_001475771 |
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| Protein GI | 157377171 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0685] 5,10-methylenetetrahydrofolate reductase |
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| TIGRFAM ID | [TIGR00676] 5,10-methylenetetrahydrofolate reductase, prokaryotic form |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTTTTC ATCATGCACA ACATGCTACA TCGCTAAACC AGAGCTTAGC CGAGCTGAAT
GGCGATATTA ACGTTTCTTT TGAGTTCTTC CCTCCTGCCA CTCCAGAGAT GGAAAAAATC
CTCTGGAATT CCATTCGTCG CCTCGAACCG CTTAATCCGA AGTTTGTCTC TGTTACTTAC
GGTGCGAACT CCGGCGTGCG TGACCGTACC CATGGTGTGA TTGAGCGTAT TCAGAAGGAA
ACTGATTTAG TTGCCGCGCC GCATCTCACC CTGGTCGATG CCAGCGATGA AGAGCTCAAA
GAGCTTGCTA AGCATTATTG GAATTCAGGT ATCAGGGATA TCGTGGCACT ACGCGGCGAT
CTGCCTGAGG GCAGCCCTAA GCCTACTCGT TTTGCCAATG ACTTAGTGCG ATTACTGCGT
TCTGTCGCCG ATTTTGATAT CTCCGTTGCG GCCTATCCCG AAGTACACCC CGATGCGCTT
AATGCTCAGG CTGACTTGAT TAATCTGAAG AAAAAAATTG ATGCCGGCGC CAACCGAGCC
ATCACGCAAT TTTTCTTCGA TGTCGAGTCC TATCTTCGAT TCCGTGACCG TTGTGTTGCG
GCCGGAATCG ATGTAGAGAT CGTTCCGGGT ATCCTGCCTG TGACCAACTT TAAACAGCTT
AAACGCTTTG CCGGTATGAC CAACGTGTCG ATTCCAGGCT GGTTACATAA ACAGTTTGAA
GGTTTGGATG ATGATCCAAC GACTCGACAG ATGGTGGGGG CCAATGTGGC TATCGACATG
GTTAAAGTCC TGTCTCGCGA AGGTGTGAAA GACTTCCATT TCTACACTCT AAACCGCGCC
GAGCTAACCT ATGCCATCTG CCATACTTTG GGTGTGCGCC CGGGGAAATA A
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| Protein sequence | MGFHHAQHAT SLNQSLAELN GDINVSFEFF PPATPEMEKI LWNSIRRLEP LNPKFVSVTY
GANSGVRDRT HGVIERIQKE TDLVAAPHLT LVDASDEELK ELAKHYWNSG IRDIVALRGD
LPEGSPKPTR FANDLVRLLR SVADFDISVA AYPEVHPDAL NAQADLINLK KKIDAGANRA
ITQFFFDVES YLRFRDRCVA AGIDVEIVPG ILPVTNFKQL KRFAGMTNVS IPGWLHKQFE
GLDDDPTTRQ MVGANVAIDM VKVLSREGVK DFHFYTLNRA ELTYAICHTL GVRPGK
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