Gene Ssed_4035 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4035 
Symbol 
ID5612709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4943828 
End bp4944661 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content43% 
IMG OID640934990 
ProductSel1 domain-containing protein 
Protein accessionYP_001475767 
Protein GI157377167 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.163286 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAA TCACACTCAT CTTGTCTTTG CTATTCGCAA GCTTTTTAAT CTTTCCGGTG 
AAGGCATCGA ACCACCTAAG TGCTTGTGAT ACTAAAGATT GCAAAGAATA CTTCAAAGCA
TACAAAATCC TCACTAAACG TGGGCATTCT GAAGCGATGG CGACCTTGGG AGAGCTGTAT
TATGCCGGTT ACGGCACAGA TAAAAACATC AAACAGGCTC TGAAATGGTT CAGGCGCGCG
GCTAAGTTCG GGATCACCTC CGCCCAATAC AAGGCCGGAA TACTCTACCT TCAGGAGTCT
GATTATCAAG ATATTGATAA AGGGCTCAAA CTACTTAAGA AGTCGACAAA ACATAGCTTC
TCTCCCGGCT CCTTCGCATT AGGAAAAATT TATCTTAACG GCGGCTTAGT AACACAAGAT
CTGACTCAAG CTGATGAGTG GTTATCAAAA GCCTTTTCAC TAAATAATCA AGAAGCTATC
AAGTTTGCCA GCAAACTAAA GAACTCACCT AAGACGGTTT CACTGGCACT TCCTAAACTA
TATGCGATGG TCGATTCTCA AGTAGAAAAC AATCAGGCCA GTGGCTCGTA TCCGCCAATC
AACGAGATGG AAACCATTAC TGTTTCCGCT CCACAATATA CCGAGTATTT TGATGCCGAG
ATAGCAAGAT TAAATAACGC TATCCCTGAC ACGTCCAGCG GCACAGGCTC TAATATTGCA
GGAAAAACCT GTGGCAATAT GTGGGGTTGC AGCACAGAGA TGGACAGTCA TCGAATAAGA
GACGTTTTAC TCTCTGATTG GGGCCTTGAA ACGCTTCAAT TCAGATTGAA CTAA
 
Protein sequence
MKKITLILSL LFASFLIFPV KASNHLSACD TKDCKEYFKA YKILTKRGHS EAMATLGELY 
YAGYGTDKNI KQALKWFRRA AKFGITSAQY KAGILYLQES DYQDIDKGLK LLKKSTKHSF
SPGSFALGKI YLNGGLVTQD LTQADEWLSK AFSLNNQEAI KFASKLKNSP KTVSLALPKL
YAMVDSQVEN NQASGSYPPI NEMETITVSA PQYTEYFDAE IARLNNAIPD TSSGTGSNIA
GKTCGNMWGC STEMDSHRIR DVLLSDWGLE TLQFRLN