Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4035 |
Symbol | |
ID | 5612709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4943828 |
End bp | 4944661 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640934990 |
Product | Sel1 domain-containing protein |
Protein accession | YP_001475767 |
Protein GI | 157377167 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.163286 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAA TCACACTCAT CTTGTCTTTG CTATTCGCAA GCTTTTTAAT CTTTCCGGTG AAGGCATCGA ACCACCTAAG TGCTTGTGAT ACTAAAGATT GCAAAGAATA CTTCAAAGCA TACAAAATCC TCACTAAACG TGGGCATTCT GAAGCGATGG CGACCTTGGG AGAGCTGTAT TATGCCGGTT ACGGCACAGA TAAAAACATC AAACAGGCTC TGAAATGGTT CAGGCGCGCG GCTAAGTTCG GGATCACCTC CGCCCAATAC AAGGCCGGAA TACTCTACCT TCAGGAGTCT GATTATCAAG ATATTGATAA AGGGCTCAAA CTACTTAAGA AGTCGACAAA ACATAGCTTC TCTCCCGGCT CCTTCGCATT AGGAAAAATT TATCTTAACG GCGGCTTAGT AACACAAGAT CTGACTCAAG CTGATGAGTG GTTATCAAAA GCCTTTTCAC TAAATAATCA AGAAGCTATC AAGTTTGCCA GCAAACTAAA GAACTCACCT AAGACGGTTT CACTGGCACT TCCTAAACTA TATGCGATGG TCGATTCTCA AGTAGAAAAC AATCAGGCCA GTGGCTCGTA TCCGCCAATC AACGAGATGG AAACCATTAC TGTTTCCGCT CCACAATATA CCGAGTATTT TGATGCCGAG ATAGCAAGAT TAAATAACGC TATCCCTGAC ACGTCCAGCG GCACAGGCTC TAATATTGCA GGAAAAACCT GTGGCAATAT GTGGGGTTGC AGCACAGAGA TGGACAGTCA TCGAATAAGA GACGTTTTAC TCTCTGATTG GGGCCTTGAA ACGCTTCAAT TCAGATTGAA CTAA
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Protein sequence | MKKITLILSL LFASFLIFPV KASNHLSACD TKDCKEYFKA YKILTKRGHS EAMATLGELY YAGYGTDKNI KQALKWFRRA AKFGITSAQY KAGILYLQES DYQDIDKGLK LLKKSTKHSF SPGSFALGKI YLNGGLVTQD LTQADEWLSK AFSLNNQEAI KFASKLKNSP KTVSLALPKL YAMVDSQVEN NQASGSYPPI NEMETITVSA PQYTEYFDAE IARLNNAIPD TSSGTGSNIA GKTCGNMWGC STEMDSHRIR DVLLSDWGLE TLQFRLN
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