Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4029 |
Symbol | |
ID | 5610007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4937831 |
End bp | 4939663 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934984 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001475761 |
Protein GI | 157377161 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00643169 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCATCCA GTGAAAAAAC TTTCCGCGAA CTCGGTCTTG CCGAGCCTTT GTTGCGTGCT CTTGACGAGC TCGGCTACGA AAAACCAACT CCAATCCAGG CTGCGAGTAT CGATCCTCTC ATGGCCGGAA AAGATATTTT AGGTCAGGCA CAAACTGGTA CAGGTAAAAC AGGTGCTTTC GCACTGCCTC TACTAAACAG CATCGACCCA AATACTAATG CTCCACAAAT TTTGGTACTT GCACCAACAC GTGAACTTGC CGTTCAGGTT GCTGAAGCTT TTGGTAGCTA CGCAAAATTT ATGAAGGGTC TACACGTTCT GCCTATTTAC GGTGGACAGA GTATGCATCA GCAATTAAAT GCTTTGCGTC GTGGACCACA GATCATTGTT GGTACTCCTG GCCGAGTTAT GGACCACATG CGTCGCGGCA CTCTTAAGTT AGAGTCGCTA AAAGCAATGG TTCTTGACGA AGCAGATGAG ATGCTAAAGA TGGGCTTCAT CGATGATATC GAATGGATCC TTGAGCATAC ACCTAAGCAA CGTCAACTAG CACTATTCTC GGCAACTATG CCTGAGCAAA TTAAGCGTGT AGCTAACAAG TATCTGTCTG AGCCTGTACA CGTGAAAATT GCTGCAACAA CAACGACTGT TGAAACCATT GAACAGCGTT TTGTACAAGT ATCACAACAC AACAAACTTG AAGCACTAGT CCGTGTTTTA GAAGTTGAGA AGACCGAAGG TATTATCATC TTCGTTCGTA CTCGTAACAG TTGTGTTGAG CTAGCTGAGA AGCTAGAAGC GCGCGGTTAC GCTTCATCAC CACTACACGG TGATATGAAT CAACAAGCAC GTGAACGTGC CGTTGATCAA CTTAAACGTG GCACACTAGA TATCATCATT GCAACTGATG TCGCGGCCCG TGGTCTCGAT GTTGAGCGTA TCGGACACGT AGTAAACTAC GATATTCCAT ATGATACTGA AGCTTACGTT CACCGTATCG GCCGTACAGG TCGTGCTGGT CGTACTGGTA TGGCGATTCT TTTCGTTACA CACAGAGAGA TGCGTATGCT ACGCACTATC GAACGTGCAA CTAAGAGCCG TATCTCACCA ATGGATGTCC CTAGCCCAGA GACTGTGACC GAGCGTCGTC TTTCTCGCTT AGGTGAGCAA GTTTCTGAGA TTATCGCTAA AGACTCTTTA GATTTCATGA AGGGCGCCGT TGCTCAACTT TGTCAGCAAC TAGAAGTCGA TACAGACATT CTTGCCGCAG CACTGCTGCA GCAAGTACAA AAAGATCGTC CACTGCAGTT ACCATCGATT CATGAGCGTC AACGTGATAG CCGTGATGAT CGTAACTCTC GTGACCGCAA TGACCGTGGC TCGCGTGACC GCAGTGATCG TCCACGTCGT GAATCACGTC CGACGCCTGG CGACCTAGGT AAAGCCGATT CACTTAAAGA CAACCCAGAC GTTAAGATGT GCCGTTACAT CATAGATGTC GGTCGTGATA ACGGTGTTGG TGTAGGTAAC ATCGTAGGTG CCGTTGCAAA TGAAGCAAAC ATCGACAGCC GTTACATAGG TCAAATCCAG TTGTTCGACC AAGTAACAGC GATTGATCTT CCTGACGGAA TGCCAAAAGA TGTCCTACAA CACCTTAAGA AAGTACGTGT TTGTGGTAGA CCTCTGAATA TCCGTGAAGC CGAAGGTGCC GAACTACCTG CAGGTGGCGA TAGCCGTCCT CCACGTCGTC CACGTAAGCC TTCTGGCGAC CGTCGCCCAT CGGGTGACAG AAAGCCACAC CGTAAAGGTA ATCCATCGAG AGATGGTGAG TAA
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Protein sequence | MSSSEKTFRE LGLAEPLLRA LDELGYEKPT PIQAASIDPL MAGKDILGQA QTGTGKTGAF ALPLLNSIDP NTNAPQILVL APTRELAVQV AEAFGSYAKF MKGLHVLPIY GGQSMHQQLN ALRRGPQIIV GTPGRVMDHM RRGTLKLESL KAMVLDEADE MLKMGFIDDI EWILEHTPKQ RQLALFSATM PEQIKRVANK YLSEPVHVKI AATTTTVETI EQRFVQVSQH NKLEALVRVL EVEKTEGIII FVRTRNSCVE LAEKLEARGY ASSPLHGDMN QQARERAVDQ LKRGTLDIII ATDVAARGLD VERIGHVVNY DIPYDTEAYV HRIGRTGRAG RTGMAILFVT HREMRMLRTI ERATKSRISP MDVPSPETVT ERRLSRLGEQ VSEIIAKDSL DFMKGAVAQL CQQLEVDTDI LAAALLQQVQ KDRPLQLPSI HERQRDSRDD RNSRDRNDRG SRDRSDRPRR ESRPTPGDLG KADSLKDNPD VKMCRYIIDV GRDNGVGVGN IVGAVANEAN IDSRYIGQIQ LFDQVTAIDL PDGMPKDVLQ HLKKVRVCGR PLNIREAEGA ELPAGGDSRP PRRPRKPSGD RRPSGDRKPH RKGNPSRDGE
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