Gene Ssed_4029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4029 
Symbol 
ID5610007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4937831 
End bp4939663 
Gene Length1833 bp 
Protein Length610 aa 
Translation table11 
GC content48% 
IMG OID640934984 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001475761 
Protein GI157377161 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00643169 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCATCCA GTGAAAAAAC TTTCCGCGAA CTCGGTCTTG CCGAGCCTTT GTTGCGTGCT 
CTTGACGAGC TCGGCTACGA AAAACCAACT CCAATCCAGG CTGCGAGTAT CGATCCTCTC
ATGGCCGGAA AAGATATTTT AGGTCAGGCA CAAACTGGTA CAGGTAAAAC AGGTGCTTTC
GCACTGCCTC TACTAAACAG CATCGACCCA AATACTAATG CTCCACAAAT TTTGGTACTT
GCACCAACAC GTGAACTTGC CGTTCAGGTT GCTGAAGCTT TTGGTAGCTA CGCAAAATTT
ATGAAGGGTC TACACGTTCT GCCTATTTAC GGTGGACAGA GTATGCATCA GCAATTAAAT
GCTTTGCGTC GTGGACCACA GATCATTGTT GGTACTCCTG GCCGAGTTAT GGACCACATG
CGTCGCGGCA CTCTTAAGTT AGAGTCGCTA AAAGCAATGG TTCTTGACGA AGCAGATGAG
ATGCTAAAGA TGGGCTTCAT CGATGATATC GAATGGATCC TTGAGCATAC ACCTAAGCAA
CGTCAACTAG CACTATTCTC GGCAACTATG CCTGAGCAAA TTAAGCGTGT AGCTAACAAG
TATCTGTCTG AGCCTGTACA CGTGAAAATT GCTGCAACAA CAACGACTGT TGAAACCATT
GAACAGCGTT TTGTACAAGT ATCACAACAC AACAAACTTG AAGCACTAGT CCGTGTTTTA
GAAGTTGAGA AGACCGAAGG TATTATCATC TTCGTTCGTA CTCGTAACAG TTGTGTTGAG
CTAGCTGAGA AGCTAGAAGC GCGCGGTTAC GCTTCATCAC CACTACACGG TGATATGAAT
CAACAAGCAC GTGAACGTGC CGTTGATCAA CTTAAACGTG GCACACTAGA TATCATCATT
GCAACTGATG TCGCGGCCCG TGGTCTCGAT GTTGAGCGTA TCGGACACGT AGTAAACTAC
GATATTCCAT ATGATACTGA AGCTTACGTT CACCGTATCG GCCGTACAGG TCGTGCTGGT
CGTACTGGTA TGGCGATTCT TTTCGTTACA CACAGAGAGA TGCGTATGCT ACGCACTATC
GAACGTGCAA CTAAGAGCCG TATCTCACCA ATGGATGTCC CTAGCCCAGA GACTGTGACC
GAGCGTCGTC TTTCTCGCTT AGGTGAGCAA GTTTCTGAGA TTATCGCTAA AGACTCTTTA
GATTTCATGA AGGGCGCCGT TGCTCAACTT TGTCAGCAAC TAGAAGTCGA TACAGACATT
CTTGCCGCAG CACTGCTGCA GCAAGTACAA AAAGATCGTC CACTGCAGTT ACCATCGATT
CATGAGCGTC AACGTGATAG CCGTGATGAT CGTAACTCTC GTGACCGCAA TGACCGTGGC
TCGCGTGACC GCAGTGATCG TCCACGTCGT GAATCACGTC CGACGCCTGG CGACCTAGGT
AAAGCCGATT CACTTAAAGA CAACCCAGAC GTTAAGATGT GCCGTTACAT CATAGATGTC
GGTCGTGATA ACGGTGTTGG TGTAGGTAAC ATCGTAGGTG CCGTTGCAAA TGAAGCAAAC
ATCGACAGCC GTTACATAGG TCAAATCCAG TTGTTCGACC AAGTAACAGC GATTGATCTT
CCTGACGGAA TGCCAAAAGA TGTCCTACAA CACCTTAAGA AAGTACGTGT TTGTGGTAGA
CCTCTGAATA TCCGTGAAGC CGAAGGTGCC GAACTACCTG CAGGTGGCGA TAGCCGTCCT
CCACGTCGTC CACGTAAGCC TTCTGGCGAC CGTCGCCCAT CGGGTGACAG AAAGCCACAC
CGTAAAGGTA ATCCATCGAG AGATGGTGAG TAA
 
Protein sequence
MSSSEKTFRE LGLAEPLLRA LDELGYEKPT PIQAASIDPL MAGKDILGQA QTGTGKTGAF 
ALPLLNSIDP NTNAPQILVL APTRELAVQV AEAFGSYAKF MKGLHVLPIY GGQSMHQQLN
ALRRGPQIIV GTPGRVMDHM RRGTLKLESL KAMVLDEADE MLKMGFIDDI EWILEHTPKQ
RQLALFSATM PEQIKRVANK YLSEPVHVKI AATTTTVETI EQRFVQVSQH NKLEALVRVL
EVEKTEGIII FVRTRNSCVE LAEKLEARGY ASSPLHGDMN QQARERAVDQ LKRGTLDIII
ATDVAARGLD VERIGHVVNY DIPYDTEAYV HRIGRTGRAG RTGMAILFVT HREMRMLRTI
ERATKSRISP MDVPSPETVT ERRLSRLGEQ VSEIIAKDSL DFMKGAVAQL CQQLEVDTDI
LAAALLQQVQ KDRPLQLPSI HERQRDSRDD RNSRDRNDRG SRDRSDRPRR ESRPTPGDLG
KADSLKDNPD VKMCRYIIDV GRDNGVGVGN IVGAVANEAN IDSRYIGQIQ LFDQVTAIDL
PDGMPKDVLQ HLKKVRVCGR PLNIREAEGA ELPAGGDSRP PRRPRKPSGD RRPSGDRKPH
RKGNPSRDGE